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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00359
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00359
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-106
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00325__D10-98
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g71A02 | 1.10.8.160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2 | 0.54 | 45.0 | 4.28e-01 | 96.7% | 77.8% |
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 46.0 | 4.10e-01 | 100.0% | 70.1% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.53 | 26.0 | 2.96e-01 | 80.4% | 58.8% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.52 | 43.0 | 4.04e-01 | 100.0% | 75.4% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 45.0 | 4.08e-01 | 100.0% | 75.0% |
| 2ar0A01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.51 | 37.0 | 3.16e-01 | 75.0% | 66.0% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 41.0 | 3.66e-01 | 89.1% | 93.3% |
| 3r89A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 40.0 | 2.91e-01 | 89.1% | 90.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4597667 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.61 | 47.0 | 4.21e-01 | 94.6% | 57.0% |
| 4649431 | 3524.1.1.2 ↗ | alpha arrays › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › PF29794 | 0.59 | 42.0 | 4.19e-01 | 95.7% | 70.7% |
| 3971256 | 101.1.4.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Xre_MbcA_ParS_C | 0.53 | 35.0 | 3.54e-01 | 89.1% | 66.7% |
| 3793204 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 46.0 | 3.30e-01 | 100.0% | 91.2% |
| 3632115 | 109.4.1.102 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL | 0.52 | 39.0 | 2.50e-01 | 79.3% | 50.7% |
| 3960460 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.50 | 41.0 | 3.67e-01 | 92.4% | 92.1% |