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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00379

Bact-Vir

BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00379

Identity

Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-76
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.77 56.0 3.96e-01 77.8% 26.6%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.75 40.0 4.03e-01 74.1% 50.9%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.75 46.0 3.90e-01 88.9% 39.1%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 62.0 5.06e-01 92.6% 74.7%
4ttrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 54.0 3.53e-01 79.6% 74.6%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 47.0 4.71e-01 100.0% 67.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 60.0 5.76e-01 94.4% 95.2%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.78e-01 90.7% 60.3%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.69 49.0 3.27e-01 74.1% 70.8%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.69 46.0 3.85e-01 70.4% 49.5%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 47.0 4.87e-01 98.1% 76.5%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 55.0 3.74e-01 87.0% 73.5%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.67 56.0 4.69e-01 92.6% 54.3%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 60.0 4.52e-01 100.0% 52.7%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.73e-01 87.0% 74.1%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.66 52.0 3.60e-01 83.3% 87.7%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 3.90e-01 92.6% 43.8%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 54.0 4.06e-01 100.0% 37.4%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 53.0 3.74e-01 100.0% 28.9%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.31e-01 85.2% 55.8%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.00e-01 100.0% 38.8%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 48.0 4.25e-01 85.2% 81.0%
1w5dA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 52.0 3.47e-01 96.3% 22.5%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.63 49.0 3.70e-01 85.2% 86.2%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.63 44.0 4.24e-01 85.2% 65.1%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 3.87e-01 100.0% 41.6%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.81e-01 94.4% 81.0%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.43e-01 94.4% 37.4%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.61 42.0 4.02e-01 87.0% 61.2%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.55e-01 100.0% 96.1%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 40.0 3.87e-01 96.3% 59.1%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 53.0 3.95e-01 100.0% 47.0%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.25e-01 96.3% 69.7%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.59 43.0 3.85e-01 77.8% 77.0%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 53.0 3.75e-01 100.0% 91.1%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 3.87e-01 100.0% 78.3%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 46.0 4.09e-01 92.6% 60.3%
1vz8A02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.58 47.0 3.81e-01 94.4% 83.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.09e-01 92.6% 68.8%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 47.0 4.61e-01 92.6% 91.4%
1sdoA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 46.0 3.32e-01 100.0% 72.4%
1cpqA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.55 50.0 3.74e-01 100.0% 88.4%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 3.89e-01 98.1% 53.1%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 42.0 3.05e-01 88.9% 50.6%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 46.0 4.51e-01 98.1% 87.9%
2ffhA03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.54 44.0 3.75e-01 100.0% 57.0%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 40.0 3.89e-01 92.6% 97.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 43.0 3.92e-01 98.1% 84.6%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 43.0 3.53e-01 96.3% 81.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932829 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.79 59.0 4.19e-01 92.6% 29.0%
4665743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 4.90e-01 92.6% 46.7%
5025290 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.74 53.0 3.97e-01 75.9% 41.5%
4952111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.73 56.0 4.18e-01 96.3% 32.4%
3554511 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.72 57.0 5.13e-01 92.6% 61.3%
5055349 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.72 61.0 4.20e-01 98.1% 29.5%
3472278 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.72 53.0 4.83e-01 88.9% 58.7%
3490008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.06e-01 88.9% 67.7%
3402782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 4.99e-01 92.6% 58.7%
5034431 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.71 48.0 3.55e-01 70.4% 44.3%
3390278 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.12e-01 87.0% 69.2%
4976235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.47e-01 98.1% 46.0%
4992111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.70 50.0 3.77e-01 87.0% 30.4%
3404571 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.69 55.0 4.96e-01 92.6% 62.5%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.69 56.0 5.04e-01 100.0% 63.5%
5051143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.04e-01 90.7% 68.0%
5036922 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.68 53.0 4.06e-01 96.3% 36.2%
4992072 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 4.88e-01 92.6% 61.3%
4927051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.09e-01 92.6% 70.0%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.18e-01 92.6% 78.3%
5065080 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.68 58.0 4.56e-01 100.0% 65.8%
None 0.67 53.0 4.80e-01 98.1% 62.5%
3743434 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.67 52.0 3.31e-01 85.2% 44.3%
4016806 101.1.10.60 alpha arrays › HTH › HTH › Cyclin-like › DUF2293 0.67 50.0 3.95e-01 79.6% 58.1%
3889516 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.66 54.0 4.48e-01 98.1% 49.5%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.59e-01 100.0% 50.0%
4983993 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 52.0 5.10e-01 98.1% 81.7%
5049350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.03e-01 98.1% 74.7%
4956886 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 48.0 3.61e-01 96.3% 30.7%
4983598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.71e-01 92.6% 72.3%
5035948 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.00e-01 100.0% 75.0%
4995688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.90e-01 92.6% 83.6%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 53.0 5.11e-01 92.6% 80.0%
3720522 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.63 53.0 3.47e-01 98.1% 52.3%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 48.0 4.84e-01 92.6% 81.8%
3911689 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.66e-01 100.0% 87.1%
3441581 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.63 45.0 4.16e-01 75.9% 58.6%
3970291 101.1.1.217 alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.63 45.0 4.77e-01 87.0% 91.1%
3809378 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.62 48.0 4.46e-01 87.0% 67.1%
5077087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.51e-01 100.0% 58.9%
3248146 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 4.28e-01 92.6% 68.3%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.24e-01 98.1% 49.5%
4952882 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.62e-01 100.0% 75.0%
4033104 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.61 49.0 4.61e-01 96.3% 72.3%
4944111 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.50e-01 92.6% 70.0%
4831662 5043.1.1.1 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 0.61 49.0 4.56e-01 92.6% 71.2%
4522587 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 44.0 4.65e-01 92.6% 97.8%
4996152 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 54.0 4.49e-01 98.1% 100.0%
3215991 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 45.0 4.24e-01 92.6% 67.7%
3277682 191.1.1.1 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.60 53.0 3.74e-01 100.0% 41.8%
3412881 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 48.0 4.13e-01 92.6% 58.7%
3174373 101.1.2.780 alpha arrays › HTH › HTH › winged helix domain › PF31199 0.59 45.0 4.20e-01 100.0% 66.7%
3720948 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 50.0 4.52e-01 100.0% 72.2%
5061636 150.1.1.205 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Trp_dioxygenase 0.58 49.0 4.25e-01 100.0% 60.7%
3588754 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.58 48.0 3.31e-01 100.0% 26.2%
3663940 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.57 47.0 2.78e-01 92.6% 44.6%
3259221 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 43.0 4.23e-01 98.1% 75.0%
3317539 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 50.0 3.91e-01 100.0% 72.2%
4971705 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.10e-01 98.1% 68.0%
4180255 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 44.0 3.74e-01 100.0% 53.7%
3186617 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 45.0 2.78e-01 98.1% 15.8%
4985881 7523.1.1.27 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1_2 0.53 49.0 3.16e-01 100.0% 50.2%
3414399 5086.1.1.106 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.51 45.0 3.18e-01 100.0% 79.4%