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BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00381
Bact-VirBML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00381
Identity
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m9iA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.63 | 40.0 | 3.95e-01 | 97.4% | 60.0% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.61 | 53.0 | 3.35e-01 | 100.0% | 57.2% |
| 3oo3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 51.0 | 3.38e-01 | 100.0% | 56.1% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.58 | 47.0 | 4.55e-01 | 89.5% | 84.9% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 32.0 | 3.78e-01 | 90.8% | 77.4% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 38.0 | 3.69e-01 | 100.0% | 58.4% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 4.02e-01 | 97.4% | 93.2% |
| 4xvxA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 45.0 | 4.12e-01 | 98.7% | 63.1% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 36.0 | 3.17e-01 | 90.8% | 44.1% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 40.0 | 3.89e-01 | 78.9% | 77.3% |
| 4rm7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 47.0 | 4.12e-01 | 100.0% | 62.3% |
| 5domA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.54 | 40.0 | 3.88e-01 | 92.1% | 68.9% |
| 1cscA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.53 | 44.0 | 3.04e-01 | 97.4% | 96.7% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.52 | 37.0 | 3.67e-01 | 75.0% | 100.0% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 40.0 | 3.77e-01 | 85.5% | 80.4% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.52 | 35.0 | 3.26e-01 | 84.2% | 54.1% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.16e-01 | 86.8% | 68.5% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.51 | 38.0 | 3.48e-01 | 81.6% | 72.6% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 40.0 | 3.24e-01 | 85.5% | 81.9% |
| 2feaA02 | 3.90.1470.20 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › | 0.51 | 38.0 | 3.57e-01 | 81.6% | 85.7% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 37.0 | 3.18e-01 | 80.3% | 86.2% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.51 | 39.0 | 3.61e-01 | 88.2% | 68.2% |
| 6ne6A01 | 1.10.400.10 | Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like | 0.50 | 36.0 | 3.26e-01 | 77.6% | 90.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3821288 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.67 | 36.0 | 2.79e-01 | 89.5% | 24.4% |
| 3340550 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.61 | 38.0 | 3.92e-01 | 97.4% | 64.0% |
| 3396919 | 3069.1.1.2 ↗ | alpha arrays › BART › BART › BART › P_C10 | 0.61 | 50.0 | 4.60e-01 | 92.1% | 90.0% |
| 3800963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 48.0 | 4.27e-01 | 100.0% | 67.3% |
| 3781282 | 109.4.1.929 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ECM29 | 0.56 | 43.0 | 3.07e-01 | 86.8% | 49.8% |
| 3645507 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 32.0 | 2.97e-01 | 97.4% | 40.0% |
| 3489242 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.55 | 34.0 | 3.40e-01 | 100.0% | 58.7% |
| 2755249 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.52 | 40.0 | 3.74e-01 | 88.2% | 73.0% |
| 3927452 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.51 | 39.0 | 3.99e-01 | 86.8% | 88.0% |
| 3210665 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 43.0 | 3.17e-01 | 100.0% | 65.0% |
| None | — | 0.51 | 40.0 | 3.11e-01 | 92.1% | 88.8% | |
| 3265048 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.50 | 36.0 | 3.68e-01 | 89.5% | 82.9% |
| 4677046 | 3625.1.1.1 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › Cmr2_hel_dom2 | 0.50 | 41.0 | 4.16e-01 | 92.1% | 100.0% |