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BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00048
Bact-VirBML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-214
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00045__D2-183
D2
high
residues 265-322
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.70 | 47.0 | 3.69e-01 | 70.7% | 79.5% |
| 1dynA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 44.0 | 3.58e-01 | 70.7% | 76.1% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.65 | 54.0 | 4.77e-01 | 100.0% | 72.5% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.63 | 44.0 | 3.33e-01 | 74.1% | 52.7% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.63 | 51.0 | 4.60e-01 | 100.0% | 71.0% |
| 4hffA00 | 3.90.1720.70 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.62 | 51.0 | 3.95e-01 | 100.0% | 43.2% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 47.0 | 2.87e-01 | 87.9% | 17.1% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 41.0 | 3.47e-01 | 70.7% | 73.8% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 47.0 | 4.06e-01 | 89.7% | 94.9% |
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 41.0 | 4.05e-01 | 75.9% | 95.3% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 3.73e-01 | 82.8% | 75.8% |
| 1qmyA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 48.0 | 3.66e-01 | 100.0% | 48.1% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.58 | 46.0 | 3.22e-01 | 98.3% | 77.6% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 39.0 | 3.38e-01 | 72.4% | 68.6% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 48.0 | 4.18e-01 | 98.3% | 81.5% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.56 | 41.0 | 3.70e-01 | 84.5% | 94.4% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 2.69e-01 | 82.8% | 83.3% |
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.53 | 42.0 | 2.54e-01 | 89.7% | 29.0% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 39.0 | 3.26e-01 | 86.2% | 76.5% |
| 1e1hA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.52 | 42.0 | 2.82e-01 | 93.1% | 54.0% |
| 1hkfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.90e-01 | 72.4% | 65.7% |
| 7ly5B01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.50 | 38.0 | 2.83e-01 | 82.8% | 52.9% |
| 3h3eA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 38.0 | 2.68e-01 | 93.1% | 41.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3926017 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 48.0 | 4.95e-01 | 72.4% | 90.9% |
| 1069946 | 219.1.1.52 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 | 0.64 | 53.0 | 3.99e-01 | 100.0% | 40.5% |
| 3487898 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 43.0 | 3.37e-01 | 70.7% | 63.1% |
| 3812071 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.61 | 46.0 | 3.78e-01 | 84.5% | 86.1% |
| 1144379 | 219.1.1.52 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 | 0.61 | 50.0 | 3.77e-01 | 98.3% | 42.9% |
| 4487049 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 46.0 | 3.34e-01 | 98.3% | 73.1% |
| 4566126 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.51 | 41.0 | 3.49e-01 | 100.0% | 83.5% |
| 5019905 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.51 | 42.0 | 3.60e-01 | 100.0% | 94.3% |
| 4949364 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.50 | 40.0 | 3.51e-01 | 100.0% | 83.8% |
| 5012995 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.50 | 42.0 | 2.99e-01 | 100.0% | 81.5% |