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BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00097
Bact-VirBML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00097
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-224
Domain cluster:
rep: IMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081842__D4-242
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 39.5 | 9.60e-10 | 83.1% | 84.3% |
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tv8B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.79 | 73.0 | 6.11e-01 | 100.0% | 60.7% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 67.0 | 5.92e-01 | 99.0% | 65.7% |
| 4k36B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 73.0 | 5.88e-01 | 100.0% | 56.6% |
| 2a5hA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 68.0 | 6.02e-01 | 100.0% | 67.8% |
| 2yx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 67.0 | 5.66e-01 | 100.0% | 65.7% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 54.0 | 4.71e-01 | 99.5% | 57.7% |
| 3hpxA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 56.0 | 4.94e-01 | 98.6% | 63.1% |
| 4ov4A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 53.0 | 4.83e-01 | 99.5% | 64.0% |
| 4v2xA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 56.0 | 4.75e-01 | 98.6% | 73.1% |
| 7fevA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 56.0 | 4.50e-01 | 100.0% | 76.0% |
| 5yrpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.60 | 46.0 | 4.56e-01 | 95.2% | 74.6% |
| 1cecA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 55.0 | 4.68e-01 | 100.0% | 77.0% |
| 3b8iC00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.59 | 47.0 | 4.27e-01 | 97.6% | 61.5% |
| 3ny7A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.59 | 33.0 | 4.27e-01 | 89.4% | 95.8% |
| 3eegB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 51.0 | 4.68e-01 | 98.6% | 71.3% |
| 6ktqA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 52.0 | 4.69e-01 | 99.0% | 70.8% |
| 1gw1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 53.0 | 4.38e-01 | 100.0% | 72.3% |
| 1n7kA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 44.0 | 4.26e-01 | 95.2% | 69.7% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 53.0 | 4.67e-01 | 99.0% | 76.4% |
| 4jejA00 | 3.20.20.390 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases | 0.58 | 45.0 | 4.32e-01 | 98.6% | 70.1% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 4.72e-01 | 98.1% | 90.7% |
| 4xltA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 34.0 | 4.18e-01 | 94.2% | 93.0% |
| 4g9pA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.57 | 51.0 | 4.60e-01 | 96.1% | 72.5% |
| 4s1hA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 53.0 | 4.73e-01 | 100.0% | 87.8% |
| 2bdqA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.57 | 47.0 | 4.70e-01 | 95.7% | 85.2% |
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.56 | 32.0 | 4.06e-01 | 92.3% | 91.3% |
| 2pljA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.56 | 47.0 | 4.55e-01 | 99.0% | 79.5% |
| 3no3A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.55 | 45.0 | 4.34e-01 | 96.1% | 75.2% |
| 1akqA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.55 | 36.0 | 4.11e-01 | 97.6% | 89.8% |
| 3fxaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 34.0 | 3.53e-01 | 94.7% | 65.4% |
| 2q09A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 49.0 | 4.36e-01 | 99.0% | 77.3% |
| 1h7nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 50.0 | 4.21e-01 | 100.0% | 69.1% |
| 2o1sB03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 30.0 | 3.75e-01 | 94.2% | 87.4% |
| 6oibA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 35.0 | 3.97e-01 | 93.2% | 88.1% |
| 4meaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 3.92e-01 | 90.8% | 95.7% |
| 3paoB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 48.0 | 4.23e-01 | 99.0% | 89.8% |
| 2hnhA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 43.0 | 3.94e-01 | 99.0% | 65.9% |
| 5c54G00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 47.0 | 4.10e-01 | 96.1% | 81.4% |
| 2gzsA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 4.46e-01 | 98.1% | 90.4% |
| 3aamA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 47.0 | 4.35e-01 | 99.5% | 79.2% |
| 3og9A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 44.0 | 4.42e-01 | 95.7% | 89.8% |
| 3cvjC00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 39.0 | 3.68e-01 | 94.7% | 66.0% |
| 5karA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 46.0 | 3.77e-01 | 100.0% | 99.8% |
| 2pz0B00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.51 | 43.0 | 4.13e-01 | 96.1% | 77.8% |
| 4ry9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 33.0 | 3.99e-01 | 93.7% | 100.0% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 31.0 | 3.87e-01 | 92.8% | 100.0% |
| 6kv9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 39.0 | 4.00e-01 | 96.6% | 84.6% |
| 3sjnA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.50 | 46.0 | 4.30e-01 | 100.0% | 86.2% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4958130 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 74.0 | 6.10e-01 | 100.0% | 57.1% |
| 4989502 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 73.0 | 5.57e-01 | 100.0% | 45.1% |
| 5006340 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 72.0 | 6.08e-01 | 100.0% | 60.0% |
| 4260578 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.81 | 72.0 | 6.25e-01 | 99.5% | 64.7% |
| 2322645 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 66.0 | 5.09e-01 | 99.5% | 41.2% |
| 5035420 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 77.0 | 6.63e-01 | 100.0% | 96.0% |
| 4972567 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 73.0 | 5.91e-01 | 100.0% | 55.2% |
| 4280202 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 72.0 | 6.68e-01 | 100.0% | 76.9% |
| 5055755 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 70.0 | 5.77e-01 | 99.5% | 55.3% |
| 5055869 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 69.0 | 5.46e-01 | 100.0% | 47.9% |
| 5056198 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 73.0 | 6.18e-01 | 99.5% | 62.9% |
| 4949910 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 71.0 | 5.65e-01 | 99.0% | 51.1% |
| 4950879 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 70.0 | 6.70e-01 | 99.5% | 82.6% |
| 5016066 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 75.0 | 6.42e-01 | 100.0% | 67.2% |
| 4946871 | 2002.1.1.224 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM | 0.79 | 75.0 | 6.04e-01 | 100.0% | 58.4% |
| 4987960 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.79 | 68.0 | 6.76e-01 | 99.0% | 87.0% |
| 4943916 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.79 | 70.0 | 6.39e-01 | 100.0% | 72.8% |
| 5068510 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 74.0 | 6.29e-01 | 100.0% | 65.1% |
| 3954200 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 68.0 | 6.27e-01 | 99.0% | 72.7% |
| 5014251 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.78 | 74.0 | 6.02e-01 | 100.0% | 59.0% |
| 3972368 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.77 | 71.0 | 6.90e-01 | 100.0% | 88.0% |
| 4249063 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.77 | 74.0 | 6.18e-01 | 100.0% | 95.1% |
| 4010520 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.77 | 73.0 | 5.75e-01 | 100.0% | 58.0% |
| 4989163 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 6.82e-01 | 100.0% | 99.2% |
| 5035070 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 70.0 | 6.83e-01 | 100.0% | 90.0% |
| 4310227 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.76 | 73.0 | 6.06e-01 | 100.0% | 61.8% |
| 4961009 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 6.74e-01 | 100.0% | 84.4% |
| 4935176 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 5.96e-01 | 100.0% | 61.2% |
| 5051937 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 71.0 | 6.20e-01 | 99.5% | 72.0% |
| 3587896 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 6.24e-01 | 100.0% | 70.3% |
| 4930546 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 72.0 | 6.06e-01 | 100.0% | 64.6% |
| 4933017 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 6.29e-01 | 100.0% | 89.1% |
| 3388141 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 6.29e-01 | 99.5% | 73.3% |
| 4933365 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 70.0 | 5.93e-01 | 100.0% | 77.3% |
| 5052277 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 5.88e-01 | 100.0% | 66.4% |
| 5049156 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 5.56e-01 | 100.0% | 55.8% |
| 5054706 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 6.81e-01 | 99.5% | 89.1% |
| 5043211 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.75 | 71.0 | 6.60e-01 | 99.5% | 89.6% |
| 5000158 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 71.0 | 6.44e-01 | 100.0% | 86.7% |
| 4985797 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 6.49e-01 | 99.5% | 80.6% |
| 5064435 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 5.50e-01 | 100.0% | 55.4% |
| 5035238 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 6.50e-01 | 100.0% | 88.2% |
| 3955139 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 6.00e-01 | 99.5% | 67.4% |
| 5032526 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 5.89e-01 | 99.5% | 66.7% |
| 5063125 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 69.0 | 6.53e-01 | 100.0% | 84.6% |
| 4970981 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 69.0 | 6.70e-01 | 100.0% | 90.0% |
| 5049899 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 65.0 | 6.40e-01 | 100.0% | 87.2% |
| 5050866 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 70.0 | 6.66e-01 | 100.0% | 88.9% |
| 4976540 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 6.32e-01 | 100.0% | 84.9% |
| 5066534 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 70.0 | 6.50e-01 | 100.0% | 83.6% |
| 5001248 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 6.39e-01 | 99.5% | 96.1% |
| 4984475 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 6.15e-01 | 99.5% | 76.1% |
| 4998610 | 2002.1.1.195 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPL | 0.73 | 69.0 | 6.07e-01 | 100.0% | 82.1% |
| 4971718 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 6.58e-01 | 100.0% | 88.5% |
| 5077296 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 68.0 | 6.30e-01 | 100.0% | 85.8% |
| 4944822 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.73 | 69.0 | 6.64e-01 | 100.0% | 91.7% |
| 5004963 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 68.0 | 6.20e-01 | 99.0% | 83.8% |
| 5024003 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 6.54e-01 | 100.0% | 87.4% |
| 5081167 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 69.0 | 5.39e-01 | 100.0% | 58.8% |
| 4992536 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.73 | 68.0 | 5.80e-01 | 100.0% | 89.5% |
| 4986916 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 68.0 | 6.27e-01 | 100.0% | 92.3% |
| 4107914 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 68.0 | 6.31e-01 | 99.5% | 89.0% |
| 4631270 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 68.0 | 6.12e-01 | 100.0% | 78.2% |
| 5033154 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 68.0 | 6.02e-01 | 100.0% | 76.5% |
| 4151287 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 68.0 | 5.90e-01 | 100.0% | 71.7% |
| 5038827 | 2002.1.1.414 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form | 0.72 | 67.0 | 5.74e-01 | 100.0% | 68.4% |
| 5058373 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 67.0 | 6.15e-01 | 99.5% | 80.8% |
| 5060550 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 67.0 | 5.98e-01 | 100.0% | 77.5% |
| 4986150 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.48e-01 | 100.0% | 64.5% |
| 4244555 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 67.0 | 5.71e-01 | 100.0% | 66.3% |
| 4982024 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 66.0 | 5.86e-01 | 100.0% | 71.6% |
| 4948684 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 65.0 | 6.27e-01 | 99.0% | 88.6% |
| 5018580 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.70 | 66.0 | 6.04e-01 | 100.0% | 79.2% |
| 4971473 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.69 | 65.0 | 5.77e-01 | 99.5% | 93.3% |
| 4948540 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 61.0 | 5.80e-01 | 94.2% | 92.3% |
| 4457810 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 46.0 | 4.24e-01 | 97.6% | 56.2% |
| 5075246 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 56.0 | 5.59e-01 | 100.0% | 89.5% |
| 5052350 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 58.0 | 5.91e-01 | 95.7% | 97.5% |
| None | — | 0.65 | 52.0 | 4.28e-01 | 99.5% | 46.8% | |
| 4167763 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 52.0 | 4.25e-01 | 98.6% | 51.6% |
| 3656599 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.57 | 28.0 | 3.93e-01 | 72.9% | 100.0% |
| 3211631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 51.0 | 4.66e-01 | 99.0% | 93.2% |
| 3227790 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 42.0 | 3.82e-01 | 80.2% | 73.7% |
| 4979289 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.54 | 47.0 | 4.32e-01 | 95.2% | 97.5% |
| 3734277 | 7573.1.1.3 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth | 0.53 | 42.0 | 4.55e-01 | 96.1% | 96.6% |
| 5050720 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.52 | 40.0 | 3.86e-01 | 95.2% | 71.6% |
| 4943521 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.52 | 39.0 | 3.76e-01 | 95.2% | 68.8% |
| 4996562 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.51 | 43.0 | 4.09e-01 | 95.7% | 75.2% |
| 4983318 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 38.0 | 3.95e-01 | 95.2% | 81.3% |
| 4970681 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 39.0 | 3.93e-01 | 95.2% | 79.0% |
D2
medium
residues 225-289
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 43.0 | 3.16e-01 | 80.0% | 59.8% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 48.0 | 3.49e-01 | 100.0% | 53.6% |
| 1xqiA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.54 | 46.0 | 3.43e-01 | 100.0% | 77.5% |
| 3ufbA01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.50 | 43.0 | 3.29e-01 | 98.5% | 89.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065351 | 2484.1.1.333 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 | 0.54 | 40.0 | 3.02e-01 | 95.4% | 29.7% |
| 4104683 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.53 | 44.0 | 3.77e-01 | 92.3% | 61.0% |