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BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00127

Bact-Vir

BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00127

Identity

Kingdom:
phage

Quality

63.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-89
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.63 40.0 4.57e-01 77.1% 93.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 51.0 3.51e-01 91.6% 82.7%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.60 34.0 4.05e-01 83.1% 86.8%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 43.0 4.37e-01 98.8% 77.8%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.58 41.0 2.71e-01 73.5% 75.7%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.57 41.0 2.74e-01 77.1% 84.6%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 41.0 3.86e-01 100.0% 62.6%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 40.0 4.00e-01 97.6% 70.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.57 43.0 4.46e-01 80.7% 91.3%
1cs3A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 37.0 3.38e-01 71.1% 50.0%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.56 45.0 4.16e-01 100.0% 68.5%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.69e-01 77.1% 78.9%
3fxhA00 1.20.120.600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall 0.52 45.0 4.07e-01 96.4% 75.2%
2z73B01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 43.0 2.88e-01 92.8% 38.2%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 35.0 3.06e-01 71.1% 54.3%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.71e-01 80.7% 87.2%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 42.0 3.06e-01 97.6% 85.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980132 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.71 44.0 5.22e-01 77.1% 94.5%
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 35.0 2.98e-01 96.4% 30.8%
3257921 7516.1.1.40 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Stealth_CR2 0.64 34.0 2.28e-01 92.8% 12.5%
5065206 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.62 55.0 4.36e-01 98.8% 100.0%
3568034 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.61 52.0 3.18e-01 95.2% 86.9%
4444947 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 36.0 3.51e-01 85.5% 56.8%
3512891 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.56 39.0 2.55e-01 72.3% 55.8%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 37.0 3.30e-01 80.7% 47.8%
3881031 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.56 40.0 2.81e-01 74.7% 40.4%
3487938 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 41.0 3.71e-01 77.1% 85.5%
4665476 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.55 48.0 3.59e-01 98.8% 48.4%
3368295 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.54 40.0 2.62e-01 78.3% 69.7%
3406863 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 40.0 2.54e-01 78.3% 58.3%
4966067 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.53 42.0 2.59e-01 88.0% 53.0%
3604523 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.01e-01 100.0% 78.3%
4033553 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.52 41.0 3.78e-01 90.4% 66.7%
3755415 2484.1.1.236 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27940 0.51 39.0 2.98e-01 84.3% 81.4%
3506058 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 36.0 3.43e-01 74.7% 72.0%
D2 high residues 123-201
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 42.0 3.88e-01 91.1% 51.4%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 43.0 3.77e-01 93.7% 46.5%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 39.0 4.43e-01 89.9% 92.9%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 42.0 3.58e-01 89.9% 43.1%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 44.0 3.72e-01 91.1% 43.4%
3fv6A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 45.0 3.72e-01 91.1% 43.4%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 42.0 3.46e-01 87.3% 39.5%
4ljiB00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.60 45.0 3.85e-01 81.0% 83.2%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.59 38.0 4.30e-01 81.0% 89.7%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 42.0 3.62e-01 86.1% 44.1%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 42.0 3.90e-01 77.2% 77.0%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.57 34.0 3.93e-01 96.2% 86.8%
4nocD00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 46.0 3.89e-01 89.9% 55.7%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 39.0 3.37e-01 87.3% 42.3%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 38.0 3.39e-01 96.2% 47.8%
2ef7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 39.0 3.46e-01 87.3% 46.0%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 39.0 3.41e-01 91.1% 46.0%
2o16B00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 40.0 3.47e-01 88.6% 45.9%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 40.0 3.47e-01 86.1% 45.9%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 37.0 3.36e-01 87.3% 47.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 40.0 4.05e-01 77.2% 80.8%
1xkfB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 39.0 3.51e-01 89.9% 50.4%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.54 38.0 3.25e-01 74.7% 51.9%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.54 43.0 3.20e-01 88.6% 35.0%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 40.0 3.97e-01 100.0% 80.2%
2p9mB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 43.0 3.71e-01 94.9% 62.0%
4dqkA02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.52 33.0 3.02e-01 89.9% 44.4%
4esyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 39.0 3.20e-01 86.1% 48.5%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 30.0 2.93e-01 81.0% 48.4%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 41.0 3.56e-01 94.9% 61.8%
3tgxB00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.50 37.0 3.28e-01 78.5% 94.8%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3651195 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 48.0 4.93e-01 88.6% 78.7%
3934865 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 51.0 3.96e-01 91.1% 36.7%
4950058 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 42.0 3.58e-01 91.1% 40.8%
2774697 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 42.0 3.60e-01 91.1% 41.9%
4397335 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 42.0 3.49e-01 91.1% 37.9%
4951211 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 42.0 3.70e-01 89.9% 45.8%
4952601 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 42.0 3.62e-01 91.1% 43.2%
3253716 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 47.0 3.99e-01 96.2% 46.5%
3254508 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 47.0 4.01e-01 96.2% 47.9%
5060478 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 41.0 3.34e-01 88.6% 35.0%
4935564 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 41.0 3.54e-01 86.1% 43.8%
5080979 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 46.0 3.94e-01 89.9% 51.1%
3217865 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.82e-01 92.4% 48.9%
3668042 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 41.0 3.57e-01 73.4% 100.0%
3261333 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 45.0 3.81e-01 94.9% 48.6%
4943700 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 41.0 3.54e-01 91.1% 45.2%
3816199 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 41.0 3.49e-01 87.3% 43.6%
3786840 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 41.0 3.41e-01 89.9% 40.0%
4957542 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 42.0 3.59e-01 89.9% 47.4%
3782399 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 40.0 3.23e-01 87.3% 34.9%
3952801 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 45.0 3.74e-01 89.9% 54.7%
371741 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 39.0 3.41e-01 91.1% 46.0%
2771586 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 41.0 3.41e-01 91.1% 40.0%
5023167 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 40.0 4.01e-01 91.1% 74.1%
4410759 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 36.0 3.29e-01 78.5% 46.1%
3617655 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.54 44.0 3.10e-01 92.4% 94.2%
3832954 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 39.0 2.61e-01 81.0% 54.4%
3386888 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 43.0 3.96e-01 93.7% 76.2%
5008314 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 40.0 3.43e-01 87.3% 51.4%
5015843 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 42.0 3.72e-01 93.7% 66.4%
4943625 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 40.0 3.40e-01 87.3% 52.1%
3270946 3755.4.1.5 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin 0.51 44.0 3.39e-01 98.7% 71.8%
4932065 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 40.0 3.39e-01 88.6% 58.0%
5067434 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 39.0 3.22e-01 87.3% 56.0%
3261526 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 42.0 3.54e-01 96.2% 55.9%