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BML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00166
Bact-VirBML_08182015_1_5m_scaffold_15_prodigal-single.1__X__X__00166
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 94-151
Domain cluster:
rep: IMGVR_UViG_3300000153_000446-3300000153-SI39nov09_135mDRAFT_10041404__D74-124
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.72 | 64.0 | 4.74e-01 | 100.0% | 47.3% |
| 2hg6A00 | 3.90.1650.10 | Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like | 0.60 | 45.0 | 3.76e-01 | 82.8% | 73.6% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.60 | 46.0 | 4.03e-01 | 87.9% | 61.5% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.60 | 53.0 | 4.25e-01 | 100.0% | 72.6% |
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 45.0 | 3.14e-01 | 84.5% | 56.3% |
| 1tdqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 3.90e-01 | 87.9% | 58.5% |
| 1uyvA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.58 | 44.0 | 2.93e-01 | 89.7% | 19.1% |
| 2m2dA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.56e-01 | 86.2% | 61.9% |
| 1gn4A02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.56 | 49.0 | 3.97e-01 | 100.0% | 72.2% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.81e-01 | 87.9% | 60.9% |
| 4ffkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.56 | 49.0 | 3.87e-01 | 100.0% | 68.3% |
| 2v5yA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.76e-01 | 87.9% | 57.9% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 3.87e-01 | 87.9% | 64.7% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.56 | 40.0 | 3.88e-01 | 77.6% | 95.4% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 3.71e-01 | 75.9% | 94.4% |
| 2e4tA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 38.0 | 3.04e-01 | 72.4% | 36.4% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.83e-01 | 87.9% | 60.5% |
| 3alxC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.61e-01 | 87.9% | 69.9% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.60e-01 | 87.9% | 56.9% |
| 3ffjA04 | 2.60.40.4040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 3.25e-01 | 84.5% | 55.1% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 38.0 | 2.85e-01 | 75.9% | 37.8% |
| 3s98A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.61e-01 | 87.9% | 66.7% |
| 6sjqA00 | 3.10.20.650 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 36.0 | 2.99e-01 | 70.7% | 72.2% |
| 3hr6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 3.57e-01 | 98.3% | 58.1% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 46.0 | 3.68e-01 | 100.0% | 60.3% |
| 3ogkH02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.52 | 37.0 | 2.21e-01 | 77.6% | 94.0% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.52 | 41.0 | 2.79e-01 | 98.3% | 61.4% |
| 3hh7A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 43.0 | 4.26e-01 | 100.0% | 89.2% |
| 4ncdA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.18e-01 | 87.9% | 69.5% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.51 | 38.0 | 3.22e-01 | 86.2% | 62.7% |
| 6sxtA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 43.0 | 3.18e-01 | 98.3% | 41.4% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.50 | 38.0 | 3.37e-01 | 87.9% | 72.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3504295 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.72 | 57.0 | 4.14e-01 | 87.9% | 43.8% |
| 3255841 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.67 | 58.0 | 3.97e-01 | 96.6% | 34.5% |
| 3278425 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.65 | 54.0 | 4.17e-01 | 96.6% | 54.7% |
| 3479862 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 50.0 | 4.33e-01 | 87.9% | 57.8% |
| 5038875 | 4166.1.1.0 ↗ | beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like | 0.63 | 55.0 | 4.44e-01 | 100.0% | 52.2% |
| 3783094 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.61 | 55.0 | 4.40e-01 | 100.0% | 74.6% |
| 5009883 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 47.0 | 3.46e-01 | 84.5% | 62.5% |
| 7370 | 4164.1.1.1 ↗ | a+b complex topology › PA1123-like › PA1123-like › PA1123-like › DUF2025 | 0.60 | 45.0 | 3.76e-01 | 82.8% | 73.6% |
| 4295310 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.60 | 49.0 | 3.76e-01 | 96.6% | 55.7% |
| 4221103 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.60 | 46.0 | 4.23e-01 | 84.5% | 75.6% |
| 4927529 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.58 | 44.0 | 3.74e-01 | 86.2% | 58.3% |
| 3226167 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 3.78e-01 | 87.9% | 53.0% |
| 3936536 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 3.65e-01 | 87.9% | 48.2% |
| 3545014 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 43.0 | 3.69e-01 | 87.9% | 55.0% |
| 3918031 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 43.0 | 3.31e-01 | 86.2% | 45.0% |
| 4944752 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 42.0 | 3.46e-01 | 87.9% | 60.8% |
| 3392943 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 42.0 | 3.26e-01 | 87.9% | 43.4% |
| 4000318 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.54 | 40.0 | 4.03e-01 | 82.8% | 86.7% |
| 4144580 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.54 | 39.0 | 3.14e-01 | 84.5% | 38.6% |
| 4944072 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.54 | 39.0 | 3.45e-01 | 82.8% | 94.0% |
| 3874637 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.54 | 40.0 | 2.91e-01 | 87.9% | 34.1% |
| 4944074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.44e-01 | 87.9% | 59.1% |
| 3528793 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.53 | 40.0 | 3.36e-01 | 87.9% | 54.8% |
| 5079471 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.40e-01 | 87.9% | 60.0% |
| 3932150 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 42.0 | 3.98e-01 | 98.3% | 74.7% |
| 3586331 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.52 | 39.0 | 2.67e-01 | 87.9% | 66.4% |
| 3910611 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 38.0 | 3.28e-01 | 87.9% | 68.2% |
| 3880283 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 39.0 | 3.45e-01 | 86.2% | 60.0% |
| 3469207 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 3.57e-01 | 87.9% | 68.2% |
| 3596308 | 11.1.4.80 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 | 0.51 | 38.0 | 3.00e-01 | 86.2% | 60.7% |
| 3888324 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.29e-01 | 86.2% | 60.0% |
| 3945511 | 1.13.1.2 ↗ | beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain › PF29831 | 0.51 | 38.0 | 3.67e-01 | 84.5% | 75.7% |
| 3403046 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 37.0 | 3.35e-01 | 87.9% | 64.2% |
| 4401973 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.50 | 41.0 | 3.80e-01 | 98.3% | 81.0% |
D2
medium
residues 38-93
Domain cluster:
representative