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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00084

Bact-Vir

BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00084

Identity

Kingdom:
phage

Quality

71.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 171-232
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.73 49.0 3.16e-01 88.7% 16.0%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.69 51.0 3.18e-01 80.6% 26.3%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 48.0 4.20e-01 83.9% 49.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 50.0 3.17e-01 80.6% 44.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 50.0 4.27e-01 82.3% 57.3%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 52.0 3.12e-01 87.1% 35.7%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 48.0 3.94e-01 77.4% 45.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 48.0 4.09e-01 85.5% 47.6%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.65 50.0 4.30e-01 83.9% 71.7%
1iyjB04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 3.48e-01 72.6% 78.3%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 47.0 3.02e-01 80.6% 45.5%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 4.26e-01 87.1% 55.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.63 50.0 4.59e-01 87.1% 82.9%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 44.0 3.58e-01 91.9% 38.1%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 52.0 3.28e-01 93.5% 37.0%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 48.0 3.83e-01 85.5% 42.4%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 3.64e-01 96.8% 31.6%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 48.0 4.65e-01 85.5% 97.1%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 46.0 3.56e-01 85.5% 82.2%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 47.0 3.19e-01 83.9% 63.2%
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.59 46.0 4.63e-01 88.7% 84.1%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 43.0 3.25e-01 88.7% 32.7%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 48.0 3.11e-01 98.4% 42.8%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 41.0 4.02e-01 80.6% 73.2%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 47.0 2.95e-01 96.8% 83.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 4.17e-01 87.1% 72.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 2.88e-01 87.1% 30.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 3.85e-01 88.7% 63.8%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 3.86e-01 90.3% 68.3%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 39.0 3.52e-01 74.2% 60.9%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.61e-01 87.1% 79.3%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 45.0 2.84e-01 90.3% 16.2%
2opcA00 2.60.40.2510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.67e-01 90.3% 91.3%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 42.0 3.25e-01 87.1% 66.7%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.10e-01 87.1% 66.1%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 45.0 3.04e-01 90.3% 37.4%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 4.24e-01 90.3% 89.6%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.54 43.0 3.17e-01 95.2% 66.8%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.17e-01 87.1% 74.5%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.53 43.0 2.94e-01 88.7% 32.4%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 3.55e-01 93.5% 58.5%
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.52 39.0 3.23e-01 91.9% 43.0%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.01e-01 93.5% 68.5%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.96e-01 100.0% 96.1%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.50 41.0 2.79e-01 98.4% 64.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245992 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 58.0 3.85e-01 93.5% 21.1%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 54.0 3.60e-01 88.7% 20.0%
3924546 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.71 56.0 4.43e-01 87.1% 90.0%
3479095 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 53.0 4.25e-01 83.9% 42.6%
3452325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 54.0 3.72e-01 82.3% 31.5%
3229412 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 54.0 4.62e-01 88.7% 50.5%
3215840 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 54.0 3.59e-01 88.7% 20.4%
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 53.0 3.77e-01 88.7% 26.0%
3226291 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 56.0 4.51e-01 93.5% 44.8%
3212890 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 53.0 3.54e-01 88.7% 20.5%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.68 51.0 2.85e-01 90.3% 6.4%
3223155 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 53.0 3.55e-01 91.9% 21.3%
3226237 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 55.0 3.68e-01 95.2% 22.7%
3230503 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 44.0 3.05e-01 72.6% 22.1%
2184 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 49.0 3.13e-01 80.6% 24.2%
3616330 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.65 44.0 3.47e-01 71.0% 36.3%
4030642 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.65 38.0 2.79e-01 83.9% 22.6%
3257279 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 48.0 2.79e-01 80.6% 16.0%
3946165 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.65 43.0 4.48e-01 71.0% 76.4%
4234296 4252.1.1.7 beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.64 51.0 3.98e-01 88.7% 86.4%
862 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.64 50.0 4.60e-01 87.1% 84.1%
2722159 5.1.3.172 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF26607 0.64 50.0 3.13e-01 87.1% 22.9%
3578232 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.63 45.0 3.08e-01 75.8% 22.2%
3226347 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 53.0 3.60e-01 96.8% 32.5%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 42.0 4.48e-01 74.2% 78.2%
3538633 5.1.12.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › WD40 0.63 47.0 2.93e-01 80.6% 29.0%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.62 49.0 3.48e-01 87.1% 28.6%
4679015 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.62 41.0 3.82e-01 75.8% 53.8%
3445173 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 41.0 4.09e-01 80.6% 66.2%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 49.0 3.78e-01 87.1% 56.3%
137964 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.60 45.0 3.09e-01 80.6% 63.4%
3432796 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 43.0 4.02e-01 77.4% 83.7%
3582941 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 46.0 3.97e-01 83.9% 67.0%
3480636 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 43.0 2.59e-01 79.0% 31.3%
4278807 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.60 46.0 3.86e-01 85.5% 54.5%
3993013 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.59 43.0 2.77e-01 79.0% 22.4%
3777739 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 44.0 2.72e-01 80.6% 27.0%
4380609 589.1.1.2 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 0.59 49.0 2.94e-01 90.3% 67.6%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.59 52.0 3.12e-01 100.0% 28.7%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 49.0 3.10e-01 95.2% 33.0%
3784139 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 3.19e-01 95.2% 41.3%
3587237 252.2.1.2 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Integrase_DNA 0.59 49.0 4.59e-01 91.9% 93.3%
4390515 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 41.0 3.16e-01 79.0% 30.0%
4635042 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 45.0 2.94e-01 85.5% 93.6%
4398495 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.57 46.0 2.56e-01 85.5% 7.5%
5022744 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 43.0 3.36e-01 93.5% 37.0%
3959610 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 48.0 3.73e-01 91.9% 98.5%
3210830 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.56 43.0 3.51e-01 91.9% 44.3%
3425532 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.56 44.0 3.32e-01 83.9% 60.0%
3859656 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 46.0 3.18e-01 98.4% 35.2%
4068568 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.55 45.0 3.04e-01 91.9% 54.6%
4944386 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.48e-01 82.3% 63.6%
3815957 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 43.0 2.80e-01 91.9% 28.1%
2048178 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.54 34.0 3.41e-01 79.0% 60.6%
5048477 109.4.1.3618 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7669 0.53 45.0 3.19e-01 100.0% 53.6%
3886322 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 40.0 2.57e-01 88.7% 28.1%
3404356 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 49.0 3.26e-01 100.0% 35.1%
5054507 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.94e-01 91.9% 73.3%
4963446 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.87e-01 80.6% 78.5%
3173166 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.52 40.0 2.98e-01 85.5% 36.6%
3579710 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 41.0 3.58e-01 91.9% 65.7%
4964361 502.1.1.3 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 0.52 37.0 3.66e-01 82.3% 70.0%
4456732 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 35.0 3.25e-01 71.0% 56.2%