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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00146

Bact-Vir

BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00146

Identity

Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
D2 medium residues 173-229
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.67 42.0 4.24e-01 78.9% 64.3%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 44.0 4.23e-01 86.0% 66.2%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 38.0 3.98e-01 73.7% 69.8%
2jgdB02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 45.0 2.84e-01 84.2% 82.6%
1baa001 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 43.0 3.04e-01 80.7% 72.4%
1wx0A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 40.0 2.76e-01 87.7% 20.4%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.57 45.0 4.35e-01 93.0% 76.1%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 45.0 3.70e-01 87.7% 55.4%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.55 43.0 3.16e-01 91.2% 86.4%
2daeA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 38.0 3.58e-01 78.9% 61.3%
1q0rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 2.63e-01 86.0% 50.2%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.51 34.0 3.43e-01 78.9% 67.8%
3mzlB02 6.10.140.1600 Special › Helix non-globular › Helix Hairpins › 0.50 34.0 3.43e-01 98.2% 73.2%
4jbeB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 41.0 2.76e-01 100.0% 76.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592355 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.61 44.0 4.23e-01 80.7% 78.6%
3581844 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.57 48.0 3.60e-01 96.5% 79.3%
3945983 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.55 45.0 3.44e-01 91.2% 69.3%
184568 103.1.1.2 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE 0.53 38.0 3.58e-01 78.9% 61.3%
3649091 185.1.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.52 33.0 3.10e-01 75.4% 49.3%
4322551 604.23.1.0 ↗ alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain 0.52 32.0 3.33e-01 89.5% 63.6%