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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00156

Bact-Vir

BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00156

Identity

Kingdom:
phage

Quality

94.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-76
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.74 53.0 5.24e-01 95.2% 71.6%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 52.0 5.09e-01 96.8% 71.0%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 52.0 5.25e-01 93.7% 82.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 57.0 4.85e-01 93.7% 56.3%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 58.0 5.00e-01 93.7% 65.3%
4d0yA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.67 54.0 3.83e-01 87.3% 53.3%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.66 52.0 4.70e-01 98.4% 61.8%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 45.0 4.25e-01 93.7% 59.2%
1a79A02 3.40.1170.20 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain 0.65 44.0 4.31e-01 100.0% 63.4%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 4.54e-01 93.7% 67.6%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 53.0 4.20e-01 93.7% 73.5%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.54e-01 93.7% 60.2%
5kfnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.63 53.0 3.82e-01 93.7% 67.2%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.62 44.0 3.19e-01 74.6% 71.1%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 47.0 4.17e-01 93.7% 54.5%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 49.0 4.05e-01 93.7% 71.4%
4r60A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.59 40.0 3.03e-01 71.4% 90.1%
3i3wA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 46.0 4.43e-01 93.7% 89.6%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.58 40.0 3.17e-01 90.5% 32.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.59e-01 100.0% 78.0%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 47.0 4.36e-01 95.2% 86.0%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 45.0 3.17e-01 87.3% 76.4%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.56e-01 100.0% 84.6%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.39e-01 100.0% 77.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.45e-01 100.0% 75.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.49e-01 100.0% 83.7%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.36e-01 96.8% 39.0%
5w3gA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.92e-01 98.4% 65.5%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.55 39.0 3.22e-01 76.2% 45.8%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.33e-01 100.0% 85.2%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.88e-01 81.0% 79.5%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 40.0 2.90e-01 82.5% 91.3%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 43.0 3.91e-01 90.5% 74.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.26e-01 98.4% 79.5%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.11e-01 96.8% 78.9%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.02e-01 88.9% 78.1%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.14e-01 98.4% 78.8%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.04e-01 96.8% 76.4%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 40.0 3.80e-01 82.5% 69.3%
3uh0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 39.0 2.61e-01 81.0% 69.9%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.22e-01 96.8% 37.7%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.14e-01 100.0% 78.8%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.91e-01 100.0% 72.9%
1mdbA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 2.96e-01 85.7% 87.4%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.72e-01 96.8% 68.3%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.92e-01 93.7% 78.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.76e-01 100.0% 73.8%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.88e-01 98.4% 73.1%
6ewjB01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 38.0 2.60e-01 84.1% 93.6%
4ocaA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 39.0 2.70e-01 84.1% 92.8%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.79e-01 100.0% 65.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4407103 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.76 58.0 5.91e-01 92.1% 85.0%
4153537 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.73 52.0 4.87e-01 96.8% 60.0%
4472004 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.73 52.0 4.96e-01 95.2% 64.0%
4174001 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.73 52.0 5.20e-01 96.8% 73.8%
4576277 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.70 50.0 4.88e-01 95.2% 68.6%
4508346 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.70 53.0 4.94e-01 96.8% 65.0%
4127496 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.70 50.0 4.75e-01 95.2% 64.0%
5061382 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.69 59.0 5.77e-01 96.8% 88.6%
4947559 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.67 49.0 4.42e-01 93.7% 55.6%
3679792 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.67 55.0 3.65e-01 93.7% 54.1%
5022748 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.65 49.0 4.46e-01 93.7% 58.9%
3646906 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 55.0 4.82e-01 95.2% 77.9%
3795359 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.65 54.0 5.07e-01 95.2% 80.0%
5027653 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 52.0 4.41e-01 100.0% 52.7%
3738490 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 49.0 4.18e-01 88.9% 94.8%
3760572 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.63 46.0 4.38e-01 77.8% 65.3%
3950768 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 47.0 4.75e-01 96.8% 84.6%
4990272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.84e-01 100.0% 82.7%
3966953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.35e-01 84.1% 96.0%
4998335 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.35e-01 100.0% 77.3%
4927755 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.98e-01 79.4% 80.0%
3955695 101.1.2.297 alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.56 47.0 4.05e-01 100.0% 75.5%
3981003 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 41.0 2.66e-01 81.0% 52.6%
3968580 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.56 46.0 4.32e-01 98.4% 79.5%
5082555 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.56 40.0 4.16e-01 81.0% 83.3%
3286573 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.00e-01 90.5% 68.8%
4928633 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.55 44.0 3.82e-01 92.1% 66.7%
4993094 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.89e-01 81.0% 72.3%
3957931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.05e-01 98.4% 71.2%
3386729 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 42.0 4.20e-01 96.8% 82.4%
5029177 101.1.2.297 alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.54 45.0 4.00e-01 100.0% 83.0%
3958838 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.91e-01 84.1% 78.3%
4941201 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.71e-01 84.1% 70.0%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.02e-01 100.0% 80.0%
3511688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.98e-01 98.4% 71.2%
4019967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.93e-01 100.0% 74.3%
5067037 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 45.0 4.25e-01 100.0% 77.5%
3329724 101.1.2.60 alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.54 42.0 4.09e-01 88.9% 82.9%
5079289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.79e-01 96.8% 57.1%
3986601 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 43.0 4.06e-01 100.0% 75.0%
3386305 101.1.2.242 alpha arrays › HTH › HTH › winged helix domain › RepL 0.54 39.0 3.86e-01 84.1% 72.9%
3474356 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.53 39.0 2.69e-01 79.4% 68.2%
4002772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.91e-01 98.4% 70.0%
3356805 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 42.0 2.96e-01 92.1% 34.0%
3620712 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 44.0 3.83e-01 98.4% 66.7%
3274420 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.57e-01 96.8% 57.7%
5066264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 4.03e-01 90.5% 90.9%
5074035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.11e-01 90.5% 88.3%
5051627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.55e-01 79.4% 65.7%
3324960 101.1.2.183 alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH 0.53 43.0 3.72e-01 96.8% 77.3%
5010061 101.1.2.87 alpha arrays › HTH › HTH › winged helix domain › PaaX 0.52 43.0 4.06e-01 95.2% 76.2%
3280644 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.83e-01 100.0% 65.6%
3816823 101.1.2.183 alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH 0.52 43.0 3.77e-01 98.4% 80.0%
4994270 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 40.0 3.87e-01 100.0% 74.7%
4992875 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.52 37.0 3.57e-01 81.0% 64.0%
5051833 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.52 43.0 3.88e-01 96.8% 93.3%
4968456 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.88e-01 88.9% 78.7%
2566 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.51 42.0 3.73e-01 96.8% 69.0%
3229656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.81e-01 100.0% 67.0%
5013587 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.90e-01 90.5% 80.0%
5065632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.53e-01 98.4% 58.0%
4973418 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 4.16e-01 98.4% 88.6%
3286728 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.54e-01 95.2% 74.3%