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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00162
Bact-VirBML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00162
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-83
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 3.52e-01 | 71.4% | 53.2% |
| 7ewfA01 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 37.0 | 2.53e-01 | 71.4% | 17.2% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 36.0 | 3.11e-01 | 73.0% | 40.4% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 45.0 | 3.25e-01 | 100.0% | 32.3% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 34.0 | 2.70e-01 | 71.4% | 45.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3252037 | 109.3.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 | 0.61 | 33.0 | 2.36e-01 | 71.4% | 17.3% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.60 | 37.0 | 2.98e-01 | 79.4% | 30.0% |
| 3980730 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.58 | 50.0 | 3.00e-01 | 100.0% | 15.8% |
| 3804986 | 809.1.1.5 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 | 0.57 | 48.0 | 4.46e-01 | 98.4% | 90.6% |
| 3449349 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.57 | 48.0 | 4.17e-01 | 98.4% | 73.3% |
| 3172537 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.56 | 35.0 | 2.68e-01 | 90.5% | 23.8% |
| 3740624 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.56 | 39.0 | 3.24e-01 | 76.2% | 89.6% |
| 4014246 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 3.18e-01 | 100.0% | 25.1% |
| 3223424 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 3.44e-01 | 81.0% | 81.8% |
| 4939519 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.54 | 36.0 | 3.06e-01 | 73.0% | 38.2% |
| 3581626 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 42.0 | 3.36e-01 | 82.5% | 80.8% |
| 3704741 | 148.1.3.174 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP | 0.54 | 37.0 | 3.00e-01 | 71.4% | 51.2% |
| 3789268 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 38.0 | 2.90e-01 | 76.2% | 36.9% |
| 3866807 | 108.1.1.16 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EFhand_Ca_insen | 0.53 | 38.0 | 3.68e-01 | 76.2% | 90.0% |
| 4022416 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 40.0 | 3.13e-01 | 82.5% | 91.9% |
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.52 | 43.0 | 3.42e-01 | 93.7% | 72.1% |
| 3469643 | 103.12.1.11 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › Intron_maturas2 | 0.52 | 35.0 | 3.63e-01 | 73.0% | 93.3% |
| 3631655 | 109.4.1.415 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_V | 0.52 | 42.0 | 2.93e-01 | 92.1% | 91.6% |
| 4380337 | 102.1.3.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DUF932 | 0.52 | 35.0 | 3.02e-01 | 71.4% | 68.1% |
| 4160981 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.52 | 36.0 | 2.60e-01 | 96.8% | 22.4% |
| 3532393 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.52 | 37.0 | 2.39e-01 | 76.2% | 16.7% |
| 4002747 | 109.4.1.1812 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc | 0.52 | 36.0 | 1.93e-01 | 73.0% | 8.2% |
| 3706633 | 148.1.3.174 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP | 0.51 | 35.0 | 2.67e-01 | 96.8% | 27.3% |