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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00312
Bact-VirBML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00312
Identity
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-134
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 36.0 | 3.54e-01 | 74.4% | 46.2% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.58 | 38.0 | 4.12e-01 | 99.2% | 77.7% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.57 | 42.0 | 4.45e-01 | 87.6% | 90.0% |
| 1sziA02 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.55 | 40.0 | 4.00e-01 | 99.2% | 71.5% |
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 43.0 | 4.27e-01 | 96.9% | 79.0% |
| 3f0cA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 48.0 | 4.69e-01 | 100.0% | 89.6% |
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 46.0 | 4.05e-01 | 93.8% | 80.2% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 48.0 | 4.16e-01 | 98.4% | 83.9% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 41.0 | 4.10e-01 | 97.7% | 79.7% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 32.0 | 3.48e-01 | 76.7% | 73.8% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 35.0 | 3.80e-01 | 100.0% | 81.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012109 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 30.0 | 2.79e-01 | 71.3% | 34.1% |
| 3385717 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 31.0 | 2.81e-01 | 73.6% | 35.3% |
| 3685912 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.56 | 35.0 | 3.44e-01 | 100.0% | 56.4% |
| 4949854 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.56 | 40.0 | 4.28e-01 | 93.0% | 84.1% |
| 3284782 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.54 | 43.0 | 4.54e-01 | 97.7% | 99.1% |
| 3963102 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.51 | 42.0 | 4.17e-01 | 100.0% | 86.4% |
| 3261143 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 38.0 | 3.50e-01 | 80.6% | 90.2% |
| 4167103 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.50 | 44.0 | 2.79e-01 | 97.7% | 84.6% |
D2
medium
residues 149-204
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wwxA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.61 | 43.0 | 2.64e-01 | 75.0% | 16.8% |
| 3uoxB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 42.0 | 2.66e-01 | 91.1% | 14.2% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 45.0 | 2.85e-01 | 87.5% | 40.5% |
| 1nijA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.05e-01 | 89.3% | 23.4% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.87e-01 | 91.1% | 17.5% |
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 42.0 | 3.56e-01 | 80.4% | 57.6% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 39.0 | 3.43e-01 | 73.2% | 58.2% |
| 4bbyA02 | 3.30.160.650 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 4.36e-01 | 75.0% | 97.7% |
| 2mp1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 42.0 | 3.82e-01 | 80.4% | 75.3% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 39.0 | 2.80e-01 | 71.4% | 42.2% |
| 4a9wA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 39.0 | 2.45e-01 | 91.1% | 12.7% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 38.0 | 3.54e-01 | 71.4% | 62.5% |
| 2n1hA00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.56 | 43.0 | 3.75e-01 | 89.3% | 92.6% |
| 5hy7B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 41.0 | 2.66e-01 | 83.9% | 28.0% |
| 1e69A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.87e-01 | 91.1% | 22.1% |
| 2wyhB06 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.55 | 46.0 | 2.97e-01 | 96.4% | 29.7% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.55 | 43.0 | 3.90e-01 | 85.7% | 85.3% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 41.0 | 3.88e-01 | 91.1% | 67.2% |
| 2vxtI00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 38.0 | 2.91e-01 | 78.6% | 68.6% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 38.0 | 3.05e-01 | 76.8% | 76.6% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 3.23e-01 | 92.9% | 49.0% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 3.25e-01 | 87.5% | 88.5% |
| 3ec3A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 36.0 | 2.81e-01 | 92.9% | 32.8% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 44.0 | 3.28e-01 | 94.6% | 83.2% |
| 3dg6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 42.0 | 3.35e-01 | 91.1% | 95.6% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.52 | 40.0 | 3.87e-01 | 91.1% | 83.3% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.80e-01 | 83.9% | 39.3% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.51 | 43.0 | 3.51e-01 | 100.0% | 60.5% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.51 | 38.0 | 3.54e-01 | 87.5% | 96.2% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 39.0 | 3.21e-01 | 87.5% | 45.3% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 41.0 | 3.39e-01 | 96.4% | 90.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3769735 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.68 | 47.0 | 3.93e-01 | 73.2% | 49.0% |
| 3935878 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.68 | 41.0 | 3.47e-01 | 75.0% | 35.8% |
| 3893771 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.66 | 46.0 | 4.57e-01 | 73.2% | 78.3% |
| 3485485 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 46.0 | 3.64e-01 | 73.2% | 41.7% |
| 3217535 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 50.0 | 3.50e-01 | 82.1% | 26.5% |
| 4009148 | 292.2.1.14 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM | 0.65 | 52.0 | 4.54e-01 | 91.1% | 61.1% |
| 3999184 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.64 | 44.0 | 3.86e-01 | 73.2% | 80.0% |
| 3172580 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 49.0 | 2.98e-01 | 91.1% | 82.5% |
| 4302938 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 48.0 | 4.32e-01 | 94.6% | 67.1% |
| 3875972 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.60 | 31.0 | 3.52e-01 | 85.7% | 65.0% |
| 4674853 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.60 | 44.0 | 3.47e-01 | 80.4% | 97.6% |
| 4161009 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.59 | 49.0 | 4.67e-01 | 100.0% | 88.6% |
| 4562940 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.58 | 44.0 | 2.77e-01 | 85.7% | 38.3% |
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.58 | 48.0 | 3.28e-01 | 94.6% | 49.5% |
| 3707052 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 45.0 | 2.72e-01 | 89.3% | 35.8% |
| 3282013 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 47.0 | 3.26e-01 | 98.2% | 59.5% |
| 3755862 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 38.0 | 3.38e-01 | 73.2% | 52.6% |
| 4280539 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.56 | 45.0 | 2.54e-01 | 92.9% | 21.4% |
| 3796896 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 32.0 | 3.47e-01 | 73.2% | 66.7% |
| 3786015 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.56 | 44.0 | 2.52e-01 | 92.9% | 23.3% |
| 4929076 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.55 | 44.0 | 3.64e-01 | 92.9% | 90.9% |
| 1396470 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.55 | 46.0 | 2.93e-01 | 96.4% | 28.2% |
| 3854670 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 44.0 | 3.37e-01 | 92.9% | 58.6% |
| 3229399 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 46.0 | 2.87e-01 | 96.4% | 26.6% |
| 3178595 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 40.0 | 2.43e-01 | 89.3% | 11.1% |
| 3458037 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.54 | 39.0 | 2.83e-01 | 80.4% | 76.0% |
| 4025365 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.53 | 45.0 | 3.61e-01 | 92.9% | 86.4% |
| 380878 | 375.1.1.55 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin | 0.53 | 41.0 | 3.85e-01 | 92.9% | 67.1% |
| 1113881 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.53 | 37.0 | 2.40e-01 | 76.8% | 15.1% |
| 5009920 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.52 | 41.0 | 2.62e-01 | 91.1% | 81.6% |
| 4525958 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.52 | 36.0 | 3.06e-01 | 75.0% | 68.5% |
| 3218134 | 4.1.2.3 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › TRA-1_regulated | 0.52 | 39.0 | 3.22e-01 | 87.5% | 94.9% |
| 4964361 | 502.1.1.3 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 | 0.51 | 36.0 | 3.38e-01 | 75.0% | 67.1% |
| 3528458 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 36.0 | 3.06e-01 | 76.8% | 75.0% |
| 4453816 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 40.0 | 2.63e-01 | 92.9% | 35.5% |
| 3437437 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.51 | 38.0 | 3.17e-01 | 92.9% | 44.8% |
| 4669381 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.50 | 45.0 | 3.70e-01 | 100.0% | 68.0% |
| 3444842 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.50 | 39.0 | 3.19e-01 | 92.9% | 44.5% |
| 4337890 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.50 | 43.0 | 2.95e-01 | 98.2% | 85.2% |
D3
medium
residues 210-247