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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00402
Bact-VirBML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00402
Identity
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-39
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.81 | 67.0 | 4.84e-01 | 100.0% | 33.0% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 65.0 | 5.71e-01 | 100.0% | 64.8% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 60.0 | 5.01e-01 | 100.0% | 50.7% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 61.0 | 5.31e-01 | 100.0% | 66.7% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 61.0 | 5.75e-01 | 100.0% | 77.8% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 4.81e-01 | 100.0% | 53.8% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 60.0 | 5.34e-01 | 100.0% | 63.6% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 59.0 | 5.48e-01 | 100.0% | 78.0% |
| 4y66F01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 55.0 | 4.82e-01 | 100.0% | 60.6% |
| 1u78A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 54.0 | 5.17e-01 | 100.0% | 77.8% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.68 | 51.0 | 3.73e-01 | 86.5% | 29.7% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 57.0 | 5.23e-01 | 100.0% | 86.0% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.66 | 44.0 | 3.55e-01 | 70.3% | 36.7% |
| 2zpaA04 | 1.20.120.890 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA(Met) cytidine acetyltransferase, tail domain | 0.66 | 55.0 | 3.78e-01 | 97.3% | 25.2% |
| 2lbfB01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 4.42e-01 | 100.0% | 62.3% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 4.15e-01 | 100.0% | 47.1% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.62 | 47.0 | 4.03e-01 | 97.3% | 54.7% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.62 | 46.0 | 3.84e-01 | 100.0% | 51.2% |
| 1t3qA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.60 | 47.0 | 3.86e-01 | 100.0% | 54.3% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 45.0 | 3.15e-01 | 100.0% | 74.1% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.54 | 40.0 | 3.56e-01 | 94.6% | 56.1% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 45.0 | 3.19e-01 | 100.0% | 30.8% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.53 | 47.0 | 3.84e-01 | 100.0% | 79.1% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.50 | 36.0 | 3.10e-01 | 97.3% | 79.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938071 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 73.0 | 6.92e-01 | 100.0% | 82.2% |
| 4944537 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 69.0 | 5.76e-01 | 100.0% | 55.7% |
| 4336911 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 69.0 | 5.66e-01 | 100.0% | 57.1% |
| 4250487 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.80 | 65.0 | 6.64e-01 | 100.0% | 97.1% |
| 3281216 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.79 | 64.0 | 5.54e-01 | 100.0% | 56.9% |
| 3590550 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 60.0 | 5.12e-01 | 97.3% | 50.8% |
| 3588225 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.79 | 60.0 | 4.26e-01 | 97.3% | 27.5% |
| 5078377 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 64.0 | 5.91e-01 | 100.0% | 70.0% |
| 3247201 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 64.0 | 5.98e-01 | 100.0% | 86.0% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 66.0 | 6.09e-01 | 100.0% | 80.0% |
| 4932774 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.78 | 69.0 | 5.33e-01 | 100.0% | 52.5% |
| 3287536 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 63.0 | 5.92e-01 | 100.0% | 75.6% |
| 5029219 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 66.0 | 5.85e-01 | 100.0% | 74.5% |
| 3492569 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.76 | 66.0 | 5.83e-01 | 100.0% | 76.4% |
| 3942452 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.76 | 61.0 | 5.20e-01 | 100.0% | 61.4% |
| 3688182 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.76 | 66.0 | 4.76e-01 | 100.0% | 61.9% |
| 4984715 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.76 | 64.0 | 4.01e-01 | 100.0% | 20.2% |
| 4010719 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.76 | 67.0 | 6.04e-01 | 100.0% | 84.0% |
| 5027676 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.76 | 61.0 | 5.59e-01 | 100.0% | 74.5% |
| 3806070 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.76 | 64.0 | 5.87e-01 | 100.0% | 88.0% |
| 5029249 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.76 | 65.0 | 5.10e-01 | 100.0% | 52.5% |
| 4897198 | 101.40.1.1 ↗ | alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N | 0.76 | 64.0 | 5.04e-01 | 100.0% | 51.9% |
| 3928087 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.75 | 61.0 | 5.15e-01 | 100.0% | 60.0% |
| 4929680 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 62.0 | 5.43e-01 | 100.0% | 61.7% |
| 4942943 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.74 | 61.0 | 4.48e-01 | 100.0% | 40.0% |
| 3207944 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 60.0 | 5.63e-01 | 100.0% | 86.0% |
| 3515964 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.73 | 62.0 | 4.64e-01 | 100.0% | 40.2% |
| 3787785 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 55.0 | 5.36e-01 | 100.0% | 77.8% |
| 3721414 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.72 | 64.0 | 5.99e-01 | 100.0% | 82.2% |
| 3518114 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.71 | 55.0 | 4.77e-01 | 100.0% | 55.7% |
| 5034673 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.69 | 55.0 | 3.82e-01 | 100.0% | 44.7% |
| 4236554 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.69 | 52.0 | 4.75e-01 | 100.0% | 71.7% |
| 3513576 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.69 | 56.0 | 5.07e-01 | 100.0% | 72.7% |
| 3761218 | 101.28.1.0 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins | 0.67 | 48.0 | 4.73e-01 | 100.0% | 71.1% |
| 3634609 | 102.1.1.116 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_6 | 0.65 | 50.0 | 4.73e-01 | 100.0% | 72.0% |
| 3588264 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 51.0 | 4.04e-01 | 100.0% | 41.1% |
| 3174238 | 101.1.1.247 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 | 0.63 | 49.0 | 4.25e-01 | 100.0% | 55.7% |
| 5045179 | 3696.1.1.5 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › Helicase_C_3 | 0.63 | 49.0 | 3.71e-01 | 100.0% | 38.3% |
| 4051059 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.62 | 47.0 | 4.44e-01 | 100.0% | 70.9% |
| 3980478 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.61 | 47.0 | 3.73e-01 | 100.0% | 37.0% |
| 4102570 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 44.0 | 4.26e-01 | 100.0% | 76.0% |
| 4995264 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.56 | 42.0 | 2.91e-01 | 100.0% | 90.3% |
| 3245965 | 5071.1.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.55 | 42.0 | 3.77e-01 | 89.2% | 59.3% |