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BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00405
Bact-VirBML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00405
Identity
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-83
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.71 | 49.0 | 5.18e-01 | 100.0% | 80.6% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 45.0 | 4.52e-01 | 100.0% | 66.2% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.66 | 47.0 | 5.06e-01 | 100.0% | 88.9% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.63 | 40.0 | 4.59e-01 | 89.3% | 92.3% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 47.0 | 4.89e-01 | 100.0% | 92.6% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.59 | 53.0 | 4.40e-01 | 100.0% | 57.5% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 37.0 | 4.23e-01 | 89.3% | 94.1% |
| 1ixdA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.57 | 47.0 | 4.22e-01 | 100.0% | 65.4% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.56 | 42.0 | 3.73e-01 | 100.0% | 53.5% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.55 | 38.0 | 3.91e-01 | 100.0% | 78.3% |
| 4rlzA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.55 | 40.0 | 3.58e-01 | 78.7% | 95.5% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 45.0 | 4.05e-01 | 100.0% | 86.9% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.83e-01 | 98.7% | 83.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4152374 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.30e-01 | 100.0% | 78.6% |
| 3774692 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.67 | 49.0 | 4.81e-01 | 100.0% | 72.5% |
| 3659671 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.64 | 46.0 | 4.79e-01 | 100.0% | 81.4% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.63 | 50.0 | 4.85e-01 | 100.0% | 76.5% |
| 3347795 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.62 | 45.0 | 4.45e-01 | 100.0% | 71.2% |
| 4039571 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.61 | 39.0 | 4.39e-01 | 84.0% | 87.3% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.84e-01 | 100.0% | 81.2% |
| 4943576 | 4.23.1.0 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like | 0.60 | 55.0 | 4.60e-01 | 100.0% | 60.0% |
| 2410381 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 46.0 | 4.57e-01 | 100.0% | 78.5% |
| 3700454 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 4.52e-01 | 100.0% | 91.3% |
| 3923767 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.59 | 51.0 | 4.78e-01 | 98.7% | 77.8% |
| 3597786 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 4.81e-01 | 100.0% | 90.5% |
| 4952973 | 4.15.1.0 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like | 0.58 | 47.0 | 4.38e-01 | 100.0% | 71.1% |
| 4932514 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.57 | 51.0 | 4.30e-01 | 100.0% | 60.0% |
| 3675120 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.57 | 44.0 | 4.29e-01 | 100.0% | 75.3% |
| 4114383 | 4.8.1.47 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 | 0.55 | 48.0 | 4.65e-01 | 100.0% | 92.9% |
| 4530545 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.54 | 48.0 | 4.48e-01 | 100.0% | 83.2% |
| 3526900 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.53 | 47.0 | 2.99e-01 | 100.0% | 30.8% |
| 3621303 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 44.0 | 3.69e-01 | 100.0% | 54.6% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 46.0 | 4.34e-01 | 100.0% | 94.4% |