←Back to structures
BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00423
Bact-VirBML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00423
Identity
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-61
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7zm7601 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.77 | 66.0 | 4.68e-01 | 100.0% | 32.9% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 43.0 | 4.40e-01 | 79.7% | 63.2% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.70 | 56.0 | 4.35e-01 | 84.7% | 42.9% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.69 | 49.0 | 5.08e-01 | 74.6% | 78.6% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 55.0 | 4.31e-01 | 96.6% | 76.9% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 52.0 | 3.47e-01 | 98.3% | 50.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.56 | 44.0 | 3.91e-01 | 89.8% | 58.6% |
| 8fnyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 50.0 | 3.42e-01 | 100.0% | 34.5% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 41.0 | 3.97e-01 | 96.6% | 73.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031064 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.77 | 70.0 | 5.77e-01 | 98.3% | 61.0% |
| 4991215 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.74 | 62.0 | 6.06e-01 | 100.0% | 84.6% |
| 5012498 | 3843.1.1.28 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD | 0.73 | 64.0 | 6.24e-01 | 100.0% | 86.2% |
| 4931837 | 3843.1.1.28 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD | 0.72 | 61.0 | 5.82e-01 | 100.0% | 78.6% |
| 5040818 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.72 | 58.0 | 4.85e-01 | 84.7% | 56.8% |
| 4076485 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.71 | 57.0 | 4.97e-01 | 84.7% | 67.1% |
| 5038239 | 3843.1.1.31 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q3 | 0.68 | 58.0 | 5.34e-01 | 100.0% | 73.3% |
| 5014074 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.67 | 56.0 | 4.93e-01 | 91.5% | 70.6% |
| 3387918 | 207.9.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 | 0.63 | 56.0 | 3.51e-01 | 100.0% | 39.4% |
| 3448742 | 109.7.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › SNAP | 0.62 | 56.0 | 5.26e-01 | 98.3% | 82.9% |
| 5049597 | 2003.1.1.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog | 0.62 | 42.0 | 2.67e-01 | 71.2% | 87.9% |
| 3784830 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 3.77e-01 | 98.3% | 29.7% |
| 2559778 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 54.0 | 4.14e-01 | 100.0% | 61.2% |
| 3974601 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.57 | 51.0 | 4.13e-01 | 98.3% | 52.7% |
| 3933337 | 109.4.1.2535 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Alpha_kinase | 0.57 | 49.0 | 2.83e-01 | 93.2% | 17.5% |
| 3622798 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 51.0 | 3.48e-01 | 98.3% | 43.7% |
| 3644409 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 43.0 | 3.57e-01 | 83.1% | 88.0% |
| 3981750 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 48.0 | 3.10e-01 | 100.0% | 45.7% |