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BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00069
Bact-VirBML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00069
Identity
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 249-371
Domain cluster:
rep: NC_006883.2__YP_214260.1__PSSM2_028__00024__D138-240
D2
medium
residues 5-59
D3
medium
residues 60-126
Domain cluster:
rep: HQ332140.1__AGG54641.1__PRQG_00038__00034__D568-616
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.73 | 52.0 | 5.63e-01 | 74.6% | 89.1% |
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 54.0 | 4.23e-01 | 91.0% | 66.7% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 47.0 | 3.92e-01 | 83.6% | 74.8% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 41.0 | 3.60e-01 | 70.1% | 71.8% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.60 | 41.0 | 3.89e-01 | 71.6% | 100.0% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 47.0 | 3.97e-01 | 100.0% | 57.9% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.94e-01 | 100.0% | 84.4% |
| 4zo2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 2.84e-01 | 91.0% | 37.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3474295 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.75 | 51.0 | 3.42e-01 | 70.1% | 41.2% |
| 4024148 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.68 | 32.0 | 4.18e-01 | 70.1% | 82.9% |
| 4177188 | 3312.1.1.0 ↗ | a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease | 0.67 | 46.0 | 4.43e-01 | 71.6% | 78.7% |
| 3995595 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.65 | 44.0 | 3.56e-01 | 71.6% | 48.9% |
| 3935342 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.64 | 44.0 | 3.71e-01 | 71.6% | 46.1% |
| 3906671 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 36.0 | 4.51e-01 | 77.6% | 97.5% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.61 | 52.0 | 3.11e-01 | 92.5% | 29.0% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.61 | 41.0 | 3.04e-01 | 71.6% | 82.6% |
| 5046549 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.61 | 36.0 | 3.44e-01 | 73.1% | 48.8% |
| 3517650 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.60 | 43.0 | 3.88e-01 | 79.1% | 56.0% |
| 4656410 | 1.1.9.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 | 0.59 | 40.0 | 3.72e-01 | 70.1% | 100.0% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.59 | 50.0 | 3.43e-01 | 98.5% | 34.7% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 50.0 | 4.19e-01 | 98.5% | 54.2% |
| 4027092 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 40.0 | 3.44e-01 | 76.1% | 91.8% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 44.0 | 3.80e-01 | 89.6% | 60.9% |
| 3957008 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.54 | 42.0 | 3.21e-01 | 86.6% | 87.1% |
| 5076987 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.53 | 41.0 | 2.76e-01 | 91.0% | 26.7% |
| 3595436 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.52 | 38.0 | 3.15e-01 | 82.1% | 86.7% |
| 4627221 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.52 | 33.0 | 3.43e-01 | 88.1% | 69.2% |
| 4948187 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.51 | 37.0 | 3.38e-01 | 77.6% | 60.0% |
| 3810658 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 42.0 | 3.09e-01 | 100.0% | 76.7% |
| 5000503 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.50 | 37.0 | 3.29e-01 | 82.1% | 54.0% |