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BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00102
Bact-VirBML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00102
Identity
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-91
Domain cluster:
rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00013__D8-52
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.68 | 48.0 | 5.08e-01 | 100.0% | 84.3% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.64 | 44.0 | 4.80e-01 | 98.2% | 95.3% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.64 | 44.0 | 4.50e-01 | 98.2% | 76.4% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 45.0 | 3.38e-01 | 100.0% | 51.9% |
| 3c7xA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.53 | 43.0 | 3.05e-01 | 94.7% | 80.6% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 42.0 | 3.16e-01 | 100.0% | 32.5% |
| 3agrA02 | 3.30.420.540 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 41.0 | 2.58e-01 | 94.7% | 67.6% |
| 2d5wA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 39.0 | 2.69e-01 | 89.5% | 46.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.82 | 57.0 | 3.26e-01 | 100.0% | 9.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.72 | 49.0 | 5.42e-01 | 100.0% | 91.1% |
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.71 | 50.0 | 5.53e-01 | 98.2% | 97.7% |
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.68 | 43.0 | 4.91e-01 | 96.5% | 92.5% |
| 4339502 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.60 | 37.0 | 3.28e-01 | 93.0% | 42.4% |
| 4067123 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.57 | 36.0 | 3.23e-01 | 91.2% | 42.4% |
| 4419934 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.57 | 48.0 | 3.30e-01 | 100.0% | 74.1% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.57 | 40.0 | 2.83e-01 | 100.0% | 22.6% |
| 3582142 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 47.0 | 3.39e-01 | 100.0% | 44.3% |
| 3921266 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.54 | 44.0 | 2.63e-01 | 94.7% | 91.0% |
| 2075817 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.53 | 45.0 | 4.00e-01 | 100.0% | 95.3% |
| 3590122 | 4999.1.1.1 ↗ | beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX | 0.53 | 31.0 | 3.05e-01 | 96.5% | 52.3% |
| None | — | 0.51 | 35.0 | 2.47e-01 | 71.9% | 88.4% | |
| 3862259 | 358.1.1.3 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 | 0.51 | 36.0 | 2.81e-01 | 75.4% | 39.2% |
| 4399997 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.50 | 42.0 | 3.19e-01 | 98.2% | 43.3% |
D2
high
residues 101-173
Domain cluster:
rep: OP186293.1__UVD36482.1__RCXUPER_64__00035__D186-271