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BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00125
Bact-VirBML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 173-350
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00039__D10-217
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 48.0 | 5.42e-01 | 98.9% | 92.0% |
| 2vz6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.66 | 28.0 | 4.12e-01 | 77.5% | 85.5% |
| 2bujB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.66 | 28.0 | 3.74e-01 | 77.0% | 73.4% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 30.0 | 4.05e-01 | 77.5% | 82.3% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.61 | 51.0 | 5.38e-01 | 96.6% | 97.5% |
| 1pzdA01 | 2.60.40.1480 | Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain | 0.60 | 29.0 | 3.14e-01 | 83.7% | 51.9% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 29.0 | 3.61e-01 | 86.0% | 73.7% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 30.0 | 3.63e-01 | 76.4% | 73.9% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 29.0 | 3.55e-01 | 85.4% | 73.5% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 35.0 | 4.10e-01 | 100.0% | 87.1% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 29.0 | 3.64e-01 | 75.3% | 85.3% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.54 | 27.0 | 3.30e-01 | 85.4% | 72.3% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 28.0 | 3.54e-01 | 75.8% | 83.8% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 35.0 | 3.91e-01 | 96.1% | 82.5% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 27.0 | 3.50e-01 | 73.6% | 85.9% |
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 26.0 | 3.32e-01 | 73.0% | 80.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.79 | 58.0 | 6.64e-01 | 90.4% | 100.0% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.79 | 50.0 | 6.04e-01 | 91.6% | 97.4% |
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 65.0 | 6.27e-01 | 98.9% | 80.5% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 57.0 | 6.44e-01 | 85.4% | 100.0% |
| 4032562 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.73 | 51.0 | 5.90e-01 | 91.6% | 96.9% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.72 | 50.0 | 5.61e-01 | 100.0% | 89.3% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 51.0 | 5.66e-01 | 100.0% | 89.0% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.72 | 52.0 | 5.73e-01 | 100.0% | 91.5% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 54.0 | 5.75e-01 | 100.0% | 88.4% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 48.0 | 5.56e-01 | 98.9% | 93.8% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.71 | 54.0 | 5.67e-01 | 98.9% | 85.9% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.71 | 53.0 | 5.80e-01 | 100.0% | 92.6% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.70 | 55.0 | 5.99e-01 | 92.1% | 96.0% |
| 4954561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 50.0 | 5.65e-01 | 91.6% | 96.3% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.70 | 48.0 | 5.64e-01 | 94.4% | 100.0% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.70 | 47.0 | 5.47e-01 | 96.1% | 96.8% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.69 | 50.0 | 5.64e-01 | 91.6% | 98.5% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.68 | 52.0 | 5.60e-01 | 100.0% | 92.2% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.68 | 47.0 | 5.05e-01 | 96.1% | 80.8% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.67 | 52.0 | 5.44e-01 | 98.9% | 86.8% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.66 | 53.0 | 5.51e-01 | 99.4% | 90.3% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.66 | 53.0 | 5.51e-01 | 99.4% | 90.3% |
| 3665347 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 27.0 | 3.51e-01 | 85.4% | 76.2% |
| 3633830 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.54 | 27.0 | 3.25e-01 | 86.5% | 67.5% |
| 3257125 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.54 | 27.0 | 3.50e-01 | 90.4% | 85.3% |
| 4943323 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.54 | 29.0 | 3.58e-01 | 75.3% | 84.6% |
| 5041672 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 27.0 | 3.37e-01 | 73.0% | 79.6% |
| 4584621 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.53 | 27.0 | 3.39e-01 | 72.5% | 83.0% |
| 4187036 | 306.7.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain | 0.52 | 32.0 | 4.03e-01 | 80.9% | 100.0% |
| 3947630 | 2484.1.1.56 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR | 0.52 | 40.0 | 2.99e-01 | 79.8% | 44.5% |
| 5072529 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 21.0 | 2.80e-01 | 92.1% | 67.8% |
| 5015216 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 30.0 | 3.47e-01 | 86.0% | 80.0% |
| 4929832 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 26.0 | 3.31e-01 | 84.8% | 82.7% |
| 2755609 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.50 | 37.0 | 3.81e-01 | 76.4% | 80.1% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.50 | 24.0 | 3.32e-01 | 79.2% | 90.0% |