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BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00244
Bact-VirBML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00244
Identity
- Kingdom:
- phage
Quality
67.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-51
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006__D16-54
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 48.6 | 8.50e-13 | 97.7% | 86.5% |
D2
high
residues 154-274_380-467
Domain cluster:
rep: PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00214__D426-549_650-721
D3
high
residues 281-371
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kvpA00 | 6.20.140.10 | Special › Other non-globular › Immunoglobulin-like › | 0.61 | 29.0 | 3.91e-01 | 94.5% | 93.0% |
| 2p3hA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 46.0 | 4.56e-01 | 100.0% | 76.5% |
| 2uxwA03 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.55 | 43.0 | 4.06e-01 | 87.9% | 95.7% |
| 2wzpR01 | 2.30.300.20 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 | 0.54 | 44.0 | 3.50e-01 | 91.2% | 56.1% |
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 33.0 | 3.78e-01 | 98.9% | 90.5% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 45.0 | 2.98e-01 | 94.5% | 32.9% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.70e-01 | 85.7% | 72.9% |
| 5cyxA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 41.0 | 3.89e-01 | 86.8% | 72.5% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.51 | 39.0 | 3.51e-01 | 84.6% | 73.4% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.53e-01 | 84.6% | 60.7% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 36.0 | 2.99e-01 | 74.7% | 61.2% |
| 1dx5M02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 44.0 | 4.11e-01 | 100.0% | 77.3% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 33.0 | 3.14e-01 | 93.4% | 55.0% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 45.0 | 4.12e-01 | 100.0% | 79.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4596553 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.65 | 42.0 | 4.49e-01 | 100.0% | 75.9% |
| 3960455 | 217.2.1.0 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like | 0.64 | 48.0 | 4.91e-01 | 79.1% | 83.3% |
| 3820548 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.58 | 50.0 | 4.28e-01 | 100.0% | 73.5% |
| 3407091 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 46.0 | 3.42e-01 | 100.0% | 38.5% |
| 4941519 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 2.98e-01 | 94.5% | 27.2% |
| 3517637 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 46.0 | 3.38e-01 | 100.0% | 49.4% |
| 3505366 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 45.0 | 3.37e-01 | 100.0% | 36.9% |
| 4400394 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.52 | 40.0 | 3.74e-01 | 85.7% | 67.8% |
| 4107100 | 11.1.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M | 0.51 | 40.0 | 3.53e-01 | 85.7% | 78.6% |
| 3550161 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 43.0 | 3.89e-01 | 100.0% | 100.0% |
| 4770105 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 45.0 | 3.88e-01 | 100.0% | 62.3% |
| 4464652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.44e-01 | 84.6% | 68.9% |
D4
high
residues 492-630
Domain cluster:
rep: ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00075__D206-329
D5
high
residues 647-660_756-853
D6
high
residues 665-752