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BML_08182015_6_5m_scaffold_153_prodigal-single.1__X__X__00001
Bact-VirBML_08182015_6_5m_scaffold_153_prodigal-single.1__X__X__00001
Identity
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-144
Domain cluster:
rep: KX925554.1__APC46301.1__X__00039__D38-182
D2
high
residues 287-400
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00333__D119-228
D3
high
residues 479-544
D4
high
residues 561-616
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kzsA01 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.85 | 77.0 | 6.95e-01 | 100.0% | 89.3% |
| 4hvzA01 | 3.30.110.170 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Protein of unknown function (DUF541), domain 1 | 0.77 | 69.0 | 5.61e-01 | 100.0% | 87.3% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.72 | 67.0 | 5.20e-01 | 100.0% | 61.6% |
| 3c8lB00 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.70 | 62.0 | 4.85e-01 | 100.0% | 86.6% |
| 2c5wB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 43.0 | 2.69e-01 | 80.4% | 19.7% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 3.11e-01 | 82.1% | 43.5% |
| 7d9cA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.47e-01 | 100.0% | 41.9% |
| 4c98A01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.61e-01 | 100.0% | 51.4% |
| 3a4yA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 42.0 | 2.80e-01 | 94.6% | 46.6% |
| 5iqaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 33.0 | 2.83e-01 | 78.6% | 42.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838922 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.87 | 70.0 | 5.95e-01 | 100.0% | 56.5% |
| 3838097 | 872.10.1.1 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain › LPP20 | 0.82 | 74.0 | 6.06e-01 | 100.0% | 79.0% |
| 3690420 | 3685.1.1.1 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA | 0.82 | 74.0 | 6.25e-01 | 100.0% | 66.7% |
| 3210445 | 3685.1.1.1 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA | 0.81 | 73.0 | 6.01e-01 | 100.0% | 60.6% |
| 3979231 | 872.1.1.4 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › DUF4312 | 0.81 | 73.0 | 6.05e-01 | 100.0% | 73.7% |
| 3388084 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.81 | 75.0 | 6.41e-01 | 100.0% | 72.9% |
| 3839688 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.79 | 69.0 | 5.88e-01 | 100.0% | 60.0% |
| 4996918 | 3685.1.1.1 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA | 0.79 | 70.0 | 6.20e-01 | 100.0% | 73.8% |
| 3385894 | 872.9.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flagella basal-body protein flgT N-terminal domain › Flagella basal-body protein flgT N-terminal domain | 0.77 | 72.0 | 5.88e-01 | 100.0% | 88.4% |
| 5058243 | 3685.1.1.0 ↗ | a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain | 0.76 | 68.0 | 6.05e-01 | 100.0% | 71.2% |
| 4963169 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.76 | 69.0 | 5.64e-01 | 100.0% | 90.0% |
| 4979660 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.72 | 58.0 | 5.10e-01 | 100.0% | 60.0% |
| 4091380 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.71 | 65.0 | 5.12e-01 | 100.0% | 62.7% |
| 3186440 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.71 | 61.0 | 5.85e-01 | 100.0% | 90.8% |
| 4934429 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.70 | 56.0 | 5.41e-01 | 100.0% | 76.9% |
| 3602395 | 872.3.1.1 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 | 0.68 | 61.0 | 5.22e-01 | 100.0% | 66.3% |
| 3697124 | 304.133.1.0 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein | 0.63 | 54.0 | 4.23e-01 | 96.4% | 64.2% |
| 3503491 | 316.1.1.16 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DZF_N | 0.60 | 47.0 | 3.72e-01 | 83.9% | 80.9% |
| 4941166 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.59 | 46.0 | 3.95e-01 | 85.7% | 92.2% |
| 4121502 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.58 | 44.0 | 3.81e-01 | 83.9% | 85.6% |
| 1172749 | 304.51.1.12 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6_N | 0.53 | 42.0 | 3.63e-01 | 100.0% | 52.4% |
| 5026113 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 38.0 | 3.22e-01 | 100.0% | 44.0% |
| 3272032 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.53 | 38.0 | 3.35e-01 | 78.6% | 75.6% |
D5
medium
residues 156-230
D6
medium
residues 413-474
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_2_prodigal-single.1__X__X__00297__D638-711
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18905.6 best | DUF5661 | 57.5 | 2.00e-15 | 95.2% | 96.9% |
D7
medium
residues 617-689