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BML_08182015_6_5m_scaffold_18_prodigal-single.1__X__X__00293

Bact-Vir

BML_08182015_6_5m_scaffold_18_prodigal-single.1__X__X__00293

Identity

Kingdom:
phage

Quality

93.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-115
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01227.28 best GTP_cyclohydroI 94.4 8.30e-27 95.3% 55.9%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.97 93.0 8.38e-01 100.0% 77.2%
4uqfA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.96 89.0 8.14e-01 96.3% 77.6%
3bp1A02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.79 60.0 5.57e-01 99.1% 63.9%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.78 59.0 5.93e-01 79.4% 77.8%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.77 61.0 4.31e-01 83.2% 40.3%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.77 59.0 5.75e-01 80.4% 78.8%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.75 58.0 5.56e-01 80.4% 76.0%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.75 58.0 5.59e-01 80.4% 76.5%
4f8bA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.74 64.0 5.78e-01 95.3% 69.8%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.72 56.0 4.21e-01 82.2% 37.8%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.63 34.0 4.07e-01 78.5% 78.9%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.62 48.0 4.39e-01 95.3% 63.1%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.61 47.0 3.86e-01 80.4% 95.8%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 55.0 4.34e-01 99.1% 81.9%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 55.0 4.33e-01 100.0% 76.8%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.46e-01 100.0% 39.4%
1te5A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 48.0 3.66e-01 89.7% 50.6%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.49e-01 74.8% 80.1%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.58 34.0 3.16e-01 86.0% 44.0%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.87e-01 100.0% 73.7%
2imhA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 50.0 4.04e-01 100.0% 71.4%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 49.0 4.07e-01 100.0% 75.4%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 48.0 4.00e-01 100.0% 76.5%
4l8kA01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.52 40.0 4.30e-01 89.7% 98.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3207298 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.98 92.0 7.00e-01 100.0% 48.4%
4108348 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.97 89.0 6.95e-01 93.5% 51.8%
5749 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.97 93.0 6.98e-01 100.0% 47.5%
None 0.97 89.0 7.19e-01 94.4% 56.1%
4519113 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.96 88.0 7.08e-01 93.5% 55.6%
4423132 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.96 89.0 7.01e-01 95.3% 52.3%
4173308 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.96 87.0 7.06e-01 93.5% 56.1%
4074298 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.96 89.0 6.92e-01 95.3% 52.5%
3365873 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.94 88.0 5.64e-01 97.2% 25.9%
4441969 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.93 85.0 6.88e-01 95.3% 55.1%
3680284 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.93 87.0 6.83e-01 97.2% 53.0%
4990176 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.92 78.0 6.48e-01 98.1% 55.3%
3663526 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.89 82.0 6.42e-01 96.3% 52.7%
4024225 230.1.1.2 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI 0.89 79.0 6.26e-01 91.6% 53.7%
1917149 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.89 64.0 6.37e-01 84.1% 72.5%
5079824 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.86 59.0 5.91e-01 79.4% 69.1%
4320720 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.84 62.0 5.78e-01 86.9% 62.8%
4532983 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.84 59.0 5.61e-01 83.2% 62.4%
4545112 230.1.1.6 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › QueF 0.81 63.0 5.98e-01 94.4% 69.6%
4492728 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.81 62.0 5.97e-01 79.4% 78.0%
3268595 230.1.1.1 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.79 63.0 5.65e-01 82.2% 78.6%
4276407 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.79 60.0 5.49e-01 78.5% 72.6%
4236832 230.1.1.1 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.79 60.0 5.19e-01 79.4% 66.9%
4558946 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.79 60.0 5.98e-01 79.4% 85.5%
5048343 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.78 60.0 5.50e-01 80.4% 75.6%
3281245 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.77 60.0 5.67e-01 80.4% 74.4%
3267306 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.77 59.0 5.56e-01 79.4% 72.0%
3737669 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.77 56.0 5.40e-01 82.2% 67.5%
4119784 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 58.0 5.48e-01 78.5% 73.4%
4305190 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 61.0 5.65e-01 83.2% 78.5%
4101594 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 60.0 5.74e-01 82.2% 80.8%
4354607 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 59.0 5.72e-01 82.2% 80.8%
4014637 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.76 57.0 5.64e-01 80.4% 75.5%
4382345 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 60.0 5.21e-01 83.2% 63.3%
4196358 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 58.0 5.59e-01 80.4% 77.5%
4551640 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.75 58.0 5.37e-01 81.3% 91.9%
4431446 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.75 58.0 4.92e-01 80.4% 90.3%
4377480 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.75 60.0 4.45e-01 83.2% 38.0%
4629438 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.74 55.0 5.52e-01 77.6% 79.1%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.74 59.0 5.72e-01 83.2% 80.2%
4120121 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.74 55.0 5.46e-01 77.6% 79.1%
4586646 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.73 57.0 5.43e-01 82.2% 76.0%
4240255 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.72 54.0 5.31e-01 78.5% 75.7%
4484391 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.71 56.0 5.35e-01 83.2% 74.4%
4014639 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.71 56.0 5.25e-01 83.2% 80.0%
4387955 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.71 61.0 5.16e-01 92.5% 92.9%
4488222 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.70 61.0 5.68e-01 92.5% 79.2%
4184949 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.69 64.0 5.58e-01 99.1% 90.3%
4193722 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.68 50.0 5.29e-01 80.4% 86.3%
3478205 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.67 41.0 4.75e-01 86.0% 82.5%
3226757 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.63 41.0 4.53e-01 93.5% 81.2%
148947 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.62 40.0 4.46e-01 93.5% 81.4%
3290584 210.2.1.2 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.61 55.0 4.24e-01 99.1% 77.9%
3956289 210.2.1.2 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.61 55.0 4.19e-01 99.1% 76.0%
3897425 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.60 40.0 4.44e-01 97.2% 84.7%
3596959 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.59 40.0 4.48e-01 95.3% 88.2%
4030146 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.59 53.0 3.99e-01 100.0% 82.3%
3482059 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.59 41.0 4.38e-01 95.3% 81.7%
3471144 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.59 41.0 4.59e-01 96.3% 90.6%
3929562 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.59 41.0 4.56e-01 95.3% 90.5%
3497368 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.57 40.0 4.43e-01 95.3% 89.4%
3487926 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.57 40.0 4.44e-01 95.3% 89.4%
3488996 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.57 40.0 4.48e-01 96.3% 90.6%
4890953 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.56 41.0 4.47e-01 98.1% 89.0%
3471972 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.56 40.0 4.46e-01 95.3% 91.8%
3688649 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 34.0 4.07e-01 95.3% 100.0%
3401140 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 42.0 2.76e-01 82.2% 23.1%
3918382 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.53 41.0 2.61e-01 83.2% 18.8%
4081839 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.51 43.0 4.23e-01 88.8% 85.0%
3783310 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 45.0 3.70e-01 99.1% 67.7%