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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00025
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00025
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.68 | 61.0 | 4.68e-01 | 100.0% | 71.4% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 46.0 | 3.85e-01 | 75.0% | 81.8% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 44.0 | 4.23e-01 | 71.4% | 64.6% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.59 | 47.0 | 3.90e-01 | 91.1% | 90.4% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 41.0 | 3.09e-01 | 80.4% | 70.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.66 | 54.0 | 3.82e-01 | 91.1% | 50.6% | |
| 4018706 | 5076.1.1.4 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › PF29555 | 0.65 | 53.0 | 3.51e-01 | 92.9% | 73.3% |
| 4679946 | 3869.1.1.1 ↗ | alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C | 0.64 | 46.0 | 3.12e-01 | 78.6% | 59.3% |
| 3474097 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.63 | 56.0 | 4.42e-01 | 100.0% | 56.5% |
| 4240067 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.61 | 49.0 | 4.55e-01 | 91.1% | 72.0% |
| 3723095 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.61 | 52.0 | 3.91e-01 | 100.0% | 46.0% |
| 3827719 | 109.4.1.775 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 45.0 | 2.93e-01 | 91.1% | 17.0% |
| 4541590 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.56 | 47.0 | 3.35e-01 | 94.6% | 67.6% |
| 3989900 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 43.0 | 3.15e-01 | 85.7% | 66.3% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.53 | 41.0 | 3.83e-01 | 91.1% | 69.3% |
D2
medium
residues 57-109
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 69.0 | 6.05e-01 | 96.2% | 65.8% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 58.0 | 4.82e-01 | 100.0% | 82.2% |
| 2hw5A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.68 | 50.0 | 4.89e-01 | 79.2% | 80.7% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 57.0 | 5.62e-01 | 98.1% | 86.0% |
| 4jfcA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.63 | 50.0 | 4.93e-01 | 86.8% | 92.9% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.61 | 33.0 | 3.01e-01 | 88.7% | 38.6% |
| 3plnA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 3.58e-01 | 100.0% | 45.5% |
| 2vx2G02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.55 | 43.0 | 4.30e-01 | 100.0% | 89.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4997462 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.81 | 62.0 | 5.76e-01 | 81.1% | 66.2% |
| 3513657 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.80 | 64.0 | 5.15e-01 | 84.9% | 48.4% |
| 5002882 | 4207.1.1.133 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › BREX_BrxC_4th | 0.77 | 64.0 | 4.90e-01 | 96.2% | 43.2% |
| 3428874 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.74 | 58.0 | 4.83e-01 | 86.8% | 48.4% |
| 4028482 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.73 | 61.0 | 4.53e-01 | 96.2% | 91.4% |
| 3428856 | 1145.1.1.1 ↗ | few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 › Per1 | 0.68 | 61.0 | 4.90e-01 | 100.0% | 70.0% |