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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00081
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00081
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-78
Domain cluster:
rep: IMGVR_UViG_3300028196_001314-3300028196-Ga0257114_10067682__D9-83
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 29.5 | 9.50e-07 | 67.1% | 53.2% |
| PF13395.13 | HNH_4 | 22.1 | 1.60e-04 | 51.3% | 53.7% |
D2
high
residues 153-214
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 29.0 | 3.56e-01 | 100.0% | 80.6% |
| 2kswA01 | 3.30.1490.260 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.59 | 31.0 | 3.42e-01 | 100.0% | 60.9% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.58 | 43.0 | 3.34e-01 | 79.0% | 56.2% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 39.0 | 2.63e-01 | 75.8% | 32.1% |
| 3fx3B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.07e-01 | 96.8% | 64.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.82 | 64.0 | 6.21e-01 | 83.9% | 75.4% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.82 | 61.0 | 6.67e-01 | 85.5% | 100.0% |
| 4155056 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.77 | 63.0 | 5.76e-01 | 93.5% | 68.8% |
| 3233038 | 226.1.1.41 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › DUF7754 | 0.72 | 51.0 | 3.30e-01 | 74.2% | 23.1% |
| 3584092 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.69 | 48.0 | 4.05e-01 | 74.2% | 55.2% |
| 3619869 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.67 | 46.0 | 3.72e-01 | 71.0% | 48.3% |
| 4230774 | 101.1.9.117 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc | 0.57 | 38.0 | 3.30e-01 | 71.0% | 45.3% |
| 4228237 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.56 | 38.0 | 4.15e-01 | 71.0% | 88.0% |
| 4630854 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.54 | 38.0 | 4.18e-01 | 90.3% | 90.0% |
| 3514709 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.53 | 38.0 | 4.01e-01 | 77.4% | 85.5% |
| 3809581 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.52 | 41.0 | 2.68e-01 | 88.7% | 45.9% |
| 3403940 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.52 | 36.0 | 3.30e-01 | 72.6% | 77.5% |