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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00138

Bact-Vir

BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00138

Identity

Kingdom:
phage

Quality

86.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-117
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 32.0 4.33e-01 89.2% 100.0%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 32.0 3.75e-01 95.2% 83.9%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.55 33.0 3.65e-01 96.4% 76.9%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.01e-01 97.6% 86.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013235 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.57 34.0 4.03e-01 88.0% 90.9%
3715537 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.55 34.0 2.71e-01 90.4% 30.2%
3518032 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 37.0 2.51e-01 74.7% 44.1%
4810204 5.1.3.128 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TEN_NHL 0.51 36.0 2.48e-01 77.1% 29.0%
3616474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 39.0 3.51e-01 86.7% 97.6%
3428912 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 39.0 2.71e-01 88.0% 88.5%