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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00164
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
66.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-70
Domain cluster:
rep: MT162467.2__QIN96912.1__X__00040__D50-108
D2
medium
residues 152-190
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ug9A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.90 | 63.0 | 3.81e-01 | 74.4% | 12.9% |
| 2py5A04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 57.0 | 5.93e-01 | 74.4% | 80.6% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.80 | 56.0 | 4.88e-01 | 74.4% | 49.2% |
| 2mhkA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 63.0 | 4.46e-01 | 94.9% | 35.2% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 54.0 | 4.01e-01 | 76.9% | 59.2% |
| 3dboB00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.73 | 53.0 | 3.75e-01 | 82.1% | 39.7% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.71 | 58.0 | 3.92e-01 | 100.0% | 23.5% |
| 3i6iA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.71 | 62.0 | 4.42e-01 | 100.0% | 73.5% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.70 | 56.0 | 3.93e-01 | 97.4% | 28.2% |
| 1te4A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 53.0 | 4.27e-01 | 92.3% | 76.4% |
| 4djgB00 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.70 | 47.0 | 4.59e-01 | 74.4% | 61.7% |
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.69 | 55.0 | 3.68e-01 | 94.9% | 63.6% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 52.0 | 3.99e-01 | 87.2% | 84.2% |
| 1nxcA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 53.0 | 3.00e-01 | 87.2% | 14.3% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.69 | 47.0 | 3.34e-01 | 71.8% | 24.3% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.67 | 55.0 | 5.02e-01 | 100.0% | 89.5% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.67 | 47.0 | 3.07e-01 | 76.9% | 25.7% |
| 3tjtA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.61 | 45.0 | 4.07e-01 | 100.0% | 56.3% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 41.0 | 3.82e-01 | 71.8% | 78.4% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 44.0 | 3.79e-01 | 87.2% | 87.9% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 41.0 | 3.12e-01 | 79.5% | 42.3% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.15e-01 | 82.1% | 39.8% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.51 | 40.0 | 3.09e-01 | 100.0% | 86.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4877794 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.93 | 66.0 | 4.12e-01 | 74.4% | 16.3% |
| 4638770 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.90 | 63.0 | 4.69e-01 | 74.4% | 32.2% |
| None | — | 0.89 | 63.0 | 3.93e-01 | 74.4% | 16.1% | |
| 4952010 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.88 | 61.0 | 4.88e-01 | 74.4% | 38.7% |
| 3343270 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.88 | 61.0 | 4.47e-01 | 74.4% | 29.6% |
| 3672480 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.86 | 60.0 | 3.96e-01 | 74.4% | 19.3% |
| 5038903 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.85 | 67.0 | 4.46e-01 | 84.6% | 45.2% |
| 4952005 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.85 | 59.0 | 4.63e-01 | 74.4% | 36.3% |
| 3348566 | 3291.1.1.106 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Chloroplast_duf | 0.84 | 61.0 | 4.04e-01 | 76.9% | 22.1% |
| 3280116 | 109.4.1.212 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_20 | 0.84 | 67.0 | 4.52e-01 | 89.7% | 34.3% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.82 | 56.0 | 4.47e-01 | 71.8% | 85.3% |
| 5056994 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 66.0 | 4.36e-01 | 89.7% | 34.7% |
| 5040591 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.78 | 55.0 | 4.21e-01 | 76.9% | 35.6% |
| 3715537 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.72 | 59.0 | 3.92e-01 | 97.4% | 22.5% |
| 5028533 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 48.0 | 3.43e-01 | 74.4% | 22.3% |
| 4974799 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.70 | 59.0 | 3.61e-01 | 94.9% | 48.8% |
| 3862340 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.70 | 47.0 | 3.82e-01 | 71.8% | 38.7% |
| 3204842 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.63 | 45.0 | 3.95e-01 | 76.9% | 67.7% |
| 3488391 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.61 | 48.0 | 3.59e-01 | 100.0% | 46.7% |
| 4991390 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.59 | 40.0 | 3.06e-01 | 71.8% | 46.3% |
| 4962137 | 5076.2.1.13 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 | 0.55 | 43.0 | 2.61e-01 | 87.2% | 75.3% |
| 3608554 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.50 | 45.0 | 2.99e-01 | 100.0% | 34.5% |