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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00172

Bact-Vir

BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00172

Identity

Kingdom:
phage

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-52
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.73 60.0 5.11e-01 100.0% 56.2%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 62.0 4.41e-01 100.0% 34.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 54.0 4.48e-01 100.0% 45.3%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.69 52.0 3.98e-01 82.6% 93.5%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.68 56.0 4.04e-01 93.5% 99.3%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 50.0 3.79e-01 100.0% 32.0%
4hjhA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.64 49.0 3.92e-01 87.0% 96.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 47.0 4.15e-01 84.8% 86.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 52.0 4.20e-01 100.0% 45.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 46.0 3.54e-01 78.3% 75.0%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 50.0 3.06e-01 91.3% 22.0%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 3.69e-01 100.0% 32.4%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 49.0 3.74e-01 100.0% 35.5%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.61 43.0 3.66e-01 78.3% 96.5%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.61 45.0 3.66e-01 87.0% 58.8%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.61 52.0 3.30e-01 97.8% 33.6%
2oxaA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.60 52.0 3.03e-01 100.0% 43.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 43.0 3.13e-01 76.1% 86.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 48.0 3.51e-01 100.0% 47.1%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 47.0 3.54e-01 100.0% 33.1%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 44.0 4.03e-01 93.5% 65.2%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 46.0 3.04e-01 97.8% 35.3%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.56 33.0 2.88e-01 84.8% 32.4%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.56 44.0 3.83e-01 100.0% 52.8%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 2.79e-01 93.5% 24.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.56e-01 97.8% 41.3%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 45.0 4.25e-01 100.0% 75.9%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.90e-01 95.7% 87.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 44.0 3.57e-01 100.0% 73.1%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.20e-01 95.7% 87.0%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.54e-01 97.8% 63.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 46.0 4.11e-01 100.0% 67.2%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.40e-01 84.8% 79.7%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 42.0 2.80e-01 97.8% 36.1%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 40.0 3.12e-01 93.5% 83.3%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 35.0 2.58e-01 73.9% 88.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.38e-01 91.3% 61.5%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 44.0 2.84e-01 100.0% 42.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 42.0 2.95e-01 97.8% 51.4%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 46.0 3.68e-01 100.0% 97.8%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 37.0 2.99e-01 84.8% 84.1%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.51 42.0 2.98e-01 100.0% 60.5%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 40.0 2.84e-01 100.0% 50.8%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.50 40.0 3.11e-01 100.0% 45.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.79 71.0 6.97e-01 100.0% 92.0%
3954708 4325.1.1.9 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.78 68.0 6.65e-01 100.0% 92.0%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.77 68.0 5.28e-01 100.0% 47.0%
3272624 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.76 67.0 4.84e-01 100.0% 39.2%
3865191 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.75 60.0 4.62e-01 100.0% 39.1%
3957641 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.74 68.0 6.36e-01 100.0% 98.2%
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.74 65.0 5.97e-01 100.0% 76.7%
4297945 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.73 64.0 6.06e-01 100.0% 83.6%
3212968 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 58.0 4.22e-01 100.0% 31.9%
4932880 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.72 43.0 3.43e-01 100.0% 31.1%
3943930 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.70 62.0 6.04e-01 100.0% 92.0%
2702299 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.69 53.0 4.03e-01 84.8% 91.8%
4988 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.69 52.0 3.98e-01 82.6% 93.5%
4982514 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.69 49.0 4.17e-01 76.1% 89.3%
5073630 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.68 52.0 4.29e-01 84.8% 98.8%
5055408 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.68 52.0 4.19e-01 84.8% 98.9%
4985600 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.67 53.0 4.68e-01 100.0% 57.5%
3283746 330.1.1.16 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 0.67 57.0 4.83e-01 100.0% 75.0%
4255330 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.66 43.0 3.43e-01 100.0% 34.8%
4193896 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.66 53.0 4.39e-01 100.0% 51.6%
5000835 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.66 47.0 3.90e-01 78.3% 97.6%
3945142 252.2.1.7 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF30395 0.65 55.0 5.41e-01 100.0% 92.0%
3566463 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 53.0 3.71e-01 100.0% 33.7%
4065004 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.64 50.0 4.06e-01 100.0% 44.5%
4018977 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 3.90e-01 100.0% 35.2%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 52.0 4.52e-01 100.0% 60.0%
3250001 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.63 48.0 3.94e-01 84.8% 97.8%
4027872 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.05e-01 100.0% 44.2%
4940833 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.62 48.0 4.03e-01 87.0% 98.8%
3200646 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.62 53.0 4.14e-01 100.0% 46.7%
3971108 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 49.0 4.15e-01 100.0% 51.1%
4965528 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 44.0 2.87e-01 80.4% 16.4%
4654713 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.60 48.0 3.38e-01 89.1% 82.1%
4411025 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.60 50.0 4.29e-01 100.0% 62.5%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 46.0 3.87e-01 89.1% 47.1%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 46.0 3.95e-01 100.0% 55.6%
5006851 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 45.0 4.04e-01 100.0% 59.5%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 49.0 3.89e-01 100.0% 43.8%
3952995 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.58 44.0 3.81e-01 95.7% 50.6%
4945857 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 3.42e-01 97.8% 34.4%
3456535 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 3.65e-01 97.8% 74.5%
3699300 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 48.0 2.80e-01 97.8% 18.3%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 46.0 3.51e-01 100.0% 81.5%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.57 42.0 3.52e-01 82.6% 100.0%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.57 45.0 3.96e-01 100.0% 68.8%
4423214 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 48.0 3.74e-01 100.0% 42.9%
3231711 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.54e-01 95.7% 45.0%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 44.0 2.42e-01 89.1% 9.5%
3887951 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 47.0 3.62e-01 100.0% 39.1%
3495949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 49.0 3.93e-01 100.0% 52.2%
4955569 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.55 45.0 3.11e-01 95.7% 57.7%
5077402 2007.15.1.0 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.55 47.0 3.22e-01 100.0% 39.5%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.36e-01 100.0% 31.0%
4194126 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.55 41.0 3.73e-01 97.8% 86.3%
4320111 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 41.0 3.53e-01 100.0% 50.0%
3593375 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 46.0 4.29e-01 100.0% 95.0%
3915668 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.54 44.0 3.69e-01 97.8% 80.0%
4339406 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 45.0 2.96e-01 97.8% 35.5%
4373440 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 43.0 3.57e-01 97.8% 91.6%
4385005 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 41.0 3.52e-01 100.0% 52.6%
4562035 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.54 42.0 3.51e-01 97.8% 66.0%
3908855 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 40.0 3.89e-01 93.5% 81.8%
3759486 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.52 44.0 3.78e-01 100.0% 73.8%
3624724 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 40.0 2.57e-01 100.0% 17.3%
3233582 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 2.72e-01 97.8% 16.8%
3646861 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.50 42.0 2.75e-01 97.8% 21.7%