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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00175
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00175
Identity
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-91
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 47.0 | 5.21e-01 | 77.6% | 78.7% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.70 | 57.0 | 4.29e-01 | 89.5% | 63.6% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.68 | 51.0 | 3.25e-01 | 78.9% | 35.0% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 45.0 | 3.65e-01 | 88.2% | 37.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 46.0 | 4.37e-01 | 71.1% | 81.5% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.68 | 51.0 | 4.28e-01 | 81.6% | 86.6% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.66 | 42.0 | 4.39e-01 | 100.0% | 71.0% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.65 | 51.0 | 3.74e-01 | 86.8% | 79.5% |
| 4htpB00 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.65 | 49.0 | 3.55e-01 | 81.6% | 59.0% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.64 | 57.0 | 3.60e-01 | 100.0% | 86.8% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.64 | 40.0 | 4.23e-01 | 100.0% | 71.6% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.63 | 53.0 | 4.52e-01 | 89.5% | 80.3% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 44.0 | 4.52e-01 | 80.3% | 76.4% |
| 4mi2A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.63 | 45.0 | 5.01e-01 | 97.4% | 100.0% |
| 2w3cA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 43.0 | 2.92e-01 | 71.1% | 37.0% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 43.0 | 4.74e-01 | 96.1% | 100.0% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.60 | 49.0 | 4.75e-01 | 96.1% | 77.9% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.59 | 46.0 | 3.55e-01 | 85.5% | 87.4% |
| 3pdiA02 | 3.40.50.12380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal | 0.58 | 50.0 | 3.44e-01 | 97.4% | 57.1% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 4.22e-01 | 97.4% | 79.5% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 44.0 | 3.49e-01 | 90.8% | 39.7% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 45.0 | 4.09e-01 | 92.1% | 65.7% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 44.0 | 3.81e-01 | 85.5% | 70.1% |
| 4byfA01 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 44.0 | 4.22e-01 | 98.7% | 74.4% |
| 3dkwG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.86e-01 | 100.0% | 69.1% |
| 2fnaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 3.03e-01 | 78.9% | 71.4% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 45.0 | 4.35e-01 | 100.0% | 83.7% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.51 | 44.0 | 3.64e-01 | 100.0% | 81.2% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 47.0 | 3.55e-01 | 100.0% | 66.3% |
| 1s4kA00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.51 | 41.0 | 3.50e-01 | 86.8% | 91.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3197460 | 6132.1.1.7 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › efThoc1 | 0.76 | 47.0 | 5.42e-01 | 72.4% | 87.3% |
| 4200061 | 604.12.1.78 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC | 0.71 | 50.0 | 4.02e-01 | 73.7% | 82.1% |
| 4943544 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 49.0 | 5.14e-01 | 100.0% | 80.0% |
| 3575264 | 604.12.1.61 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like | 0.69 | 49.0 | 4.25e-01 | 73.7% | 67.8% |
| 3370743 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 46.0 | 4.54e-01 | 76.3% | 65.0% |
| 5073477 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.68 | 49.0 | 3.95e-01 | 77.6% | 90.7% |
| 5062691 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 47.0 | 4.81e-01 | 96.1% | 74.7% |
| 5008134 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.67 | 47.0 | 4.18e-01 | 86.8% | 52.4% |
| 3738358 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 44.0 | 4.45e-01 | 93.4% | 68.0% |
| 3980912 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.66 | 55.0 | 4.76e-01 | 89.5% | 93.9% |
| 3719395 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.66 | 55.0 | 3.50e-01 | 92.1% | 37.4% |
| 2711690 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.66 | 54.0 | 3.67e-01 | 89.5% | 34.3% |
| 3693297 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 45.0 | 4.70e-01 | 92.1% | 80.0% |
| 1758759 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.64 | 53.0 | 3.73e-01 | 89.5% | 42.2% |
| 5082960 | 159.1.2.35 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS | 0.63 | 46.0 | 4.65e-01 | 98.7% | 78.7% |
| 3787527 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.63 | 57.0 | 5.53e-01 | 100.0% | 89.4% |
| 2095477 | 1170.1.2.2 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) | 0.63 | 38.0 | 3.08e-01 | 85.5% | 32.4% |
| 3872910 | 1105.1.1.1 ↗ | alpha complex topology › Retinol uptake receptor STRA6 › Retinol uptake receptor STRA6 › Retinol uptake receptor STRA6 › RBP_receptor | 0.62 | 48.0 | 2.86e-01 | 84.2% | 35.6% |
| 3918098 | 604.6.1.57 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Not3 | 0.62 | 47.0 | 4.21e-01 | 88.2% | 59.0% |
| 3224005 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.61 | 50.0 | 3.10e-01 | 88.2% | 21.9% |
| 3248938 | 5050.1.1.40 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PGAP2IP_TM_1nd | 0.61 | 51.0 | 3.84e-01 | 93.4% | 92.8% |
| 3207585 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.61 | 51.0 | 5.09e-01 | 100.0% | 87.5% |
| 3208316 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 3.43e-01 | 89.5% | 60.0% |
| 5071514 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 42.0 | 4.23e-01 | 76.3% | 74.7% |
| 3983736 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.59 | 48.0 | 4.19e-01 | 90.8% | 85.8% |
| 3939205 | 3729.1.1.0 ↗ | alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain | 0.58 | 49.0 | 4.06e-01 | 92.1% | 83.7% |
| 3482601 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.57 | 45.0 | 3.36e-01 | 82.9% | 52.2% |
| 3472767 | 5059.1.1.17 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 | 0.57 | 43.0 | 4.13e-01 | 82.9% | 100.0% |
| 3577514 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.57 | 45.0 | 2.96e-01 | 89.5% | 74.0% |
| 3857963 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 50.0 | 2.86e-01 | 98.7% | 35.8% |
| 3938539 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 48.0 | 3.60e-01 | 97.4% | 91.2% |
| 3254674 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.56 | 43.0 | 2.80e-01 | 84.2% | 63.9% |
| 3741385 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.55 | 44.0 | 3.76e-01 | 90.8% | 68.1% |
| 3570911 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 44.0 | 2.90e-01 | 89.5% | 71.1% |
| 4135068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 2.78e-01 | 92.1% | 28.4% |
| 3415116 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 43.0 | 2.45e-01 | 86.8% | 70.1% |
| 4994982 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.52 | 38.0 | 3.84e-01 | 85.5% | 78.7% |
| 4987328 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.52 | 38.0 | 3.66e-01 | 97.4% | 69.4% |