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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00179

Bact-Vir

BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00179

Identity

Kingdom:
phage

Quality

91.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-136
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.79 39.0 3.65e-01 77.5% 39.4%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 37.0 3.86e-01 80.0% 59.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 40.0 4.83e-01 80.0% 96.2%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 37.0 3.52e-01 72.5% 47.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.64 46.0 4.14e-01 75.0% 74.5%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 46.0 3.28e-01 92.5% 24.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.62 47.0 4.22e-01 80.0% 78.0%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.18e-01 83.7% 46.3%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 35.0 2.95e-01 72.5% 33.6%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.60 48.0 4.22e-01 87.5% 82.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.49e-01 81.2% 88.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 36.0 4.24e-01 88.7% 92.3%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 39.0 3.84e-01 97.5% 62.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.08e-01 98.8% 75.3%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 34.0 4.18e-01 90.0% 100.0%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 3.02e-01 87.5% 59.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 34.0 4.00e-01 85.0% 87.0%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.89e-01 88.7% 64.5%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.57 48.0 3.79e-01 96.2% 91.2%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.19e-01 93.8% 37.6%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.17e-01 93.8% 67.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 32.0 4.01e-01 73.8% 97.9%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 50.0 3.34e-01 100.0% 86.2%
1vquB02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.55 47.0 3.36e-01 97.5% 88.6%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 47.0 3.06e-01 100.0% 95.9%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 4.00e-01 75.0% 98.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 34.0 3.62e-01 71.2% 69.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 4.10e-01 76.2% 94.7%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 3.03e-01 93.8% 62.7%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.94e-01 92.5% 36.3%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 45.0 3.13e-01 100.0% 88.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 44.0 3.73e-01 93.8% 99.3%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.16e-01 100.0% 95.3%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 45.0 3.95e-01 97.5% 88.8%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.09e-01 100.0% 84.7%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.97e-01 100.0% 94.1%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.52 45.0 4.25e-01 97.5% 91.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.57e-01 77.5% 91.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.83e-01 90.0% 91.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 32.0 3.64e-01 75.0% 86.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.96e-01 91.3% 95.0%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.02e-01 100.0% 77.7%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.49e-01 100.0% 75.7%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.99e-01 100.0% 90.9%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.50 43.0 3.27e-01 96.2% 79.6%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.50 34.0 3.04e-01 71.2% 49.6%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3215840 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 46.0 3.22e-01 98.8% 21.2%
3226291 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 46.0 3.97e-01 98.8% 44.0%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.80e-01 90.0% 97.8%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 40.0 4.72e-01 80.0% 87.3%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.50e-01 80.0% 85.5%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.43e-01 80.0% 83.6%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 39.0 4.51e-01 80.0% 85.5%
3275404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 39.0 4.47e-01 76.2% 81.7%
3254426 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 51.0 4.27e-01 87.5% 70.4%
5040416 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 37.0 4.41e-01 93.8% 94.0%
3821398 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 56.0 3.78e-01 100.0% 88.5%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 37.0 4.13e-01 71.2% 76.7%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.27e-01 80.0% 85.5%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.45e-01 83.7% 84.6%
None 0.61 46.0 3.10e-01 80.0% 25.3%
3380722 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 51.0 3.56e-01 92.5% 47.9%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 35.0 4.07e-01 82.5% 83.6%
3500244 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.87e-01 78.8% 20.8%
3597338 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 45.0 3.35e-01 80.0% 59.5%
3814457 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 50.0 3.36e-01 92.5% 45.1%
3750824 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.60 44.0 2.90e-01 77.5% 27.8%
3378005 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 51.0 3.46e-01 93.8% 45.5%
3621078 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.59 50.0 3.22e-01 93.8% 32.3%
3187725 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.17e-01 92.5% 29.4%
3712069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.23e-01 92.5% 33.9%
5054991 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.59 48.0 3.49e-01 90.0% 87.9%
3183049 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 49.0 3.14e-01 92.5% 33.1%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.58 52.0 3.39e-01 96.2% 34.8%
3921266 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.58 49.0 3.02e-01 93.8% 43.7%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.58 50.0 3.41e-01 93.8% 57.1%
3672152 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.58 51.0 3.31e-01 96.2% 33.4%
3993098 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.58 50.0 2.97e-01 95.0% 20.2%
3569201 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 49.0 3.11e-01 92.5% 32.0%
3273272 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.14e-01 93.8% 32.8%
3687101 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 51.0 3.49e-01 100.0% 97.3%
3454355 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.57 49.0 3.32e-01 93.8% 63.8%
4028583 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.26e-01 92.5% 35.7%
3249876 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.57 50.0 3.38e-01 96.2% 79.7%
3343255 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 48.0 2.98e-01 93.8% 45.5%
3194043 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 49.0 3.03e-01 93.8% 43.3%
4027676 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.01e-01 90.0% 23.4%
3832822 5.1.5.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_IFT122_1st 0.57 50.0 3.05e-01 96.2% 39.7%
3640359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 2.98e-01 93.8% 37.4%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.84e-01 95.0% 65.6%
3869953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.04e-01 92.5% 45.7%
3996732 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 45.0 3.11e-01 88.7% 45.8%
3619936 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 45.0 2.82e-01 87.5% 35.2%
3770073 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 47.0 3.01e-01 92.5% 32.4%
3908594 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.95e-01 88.7% 59.1%
3593349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 47.0 3.22e-01 95.0% 40.6%
3896169 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 46.0 3.05e-01 92.5% 33.1%
3466177 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.55 40.0 3.13e-01 80.0% 73.3%
4944450 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 48.0 3.85e-01 97.5% 60.6%
3576228 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 47.0 4.52e-01 95.0% 83.7%
3613171 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 3.51e-01 95.0% 64.7%
3931300 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 48.0 4.68e-01 98.8% 95.6%
3241852 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 49.0 4.32e-01 100.0% 100.0%
3307230 109.46.1.9 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40 0.54 47.0 2.95e-01 100.0% 56.4%
3800122 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 45.0 3.60e-01 93.8% 97.6%
3788007 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.81e-01 93.8% 37.9%
3251013 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.15e-01 100.0% 82.3%
3533653 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.54 47.0 2.94e-01 97.5% 94.7%
3743943 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 47.0 2.99e-01 100.0% 88.1%
3297011 5.1.4.266 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.53 47.0 3.17e-01 100.0% 73.2%
4001894 207.1.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.53 45.0 2.59e-01 93.8% 36.0%
3831652 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.53 47.0 3.75e-01 98.8% 72.8%
3592053 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.46e-01 100.0% 60.5%
3272412 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 43.0 3.19e-01 93.8% 51.7%
3447523 5.1.4.323 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st 0.52 45.0 3.06e-01 100.0% 95.8%
None 0.52 45.0 2.93e-01 100.0% 82.2%
3631797 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.52 45.0 3.09e-01 100.0% 90.8%
3653947 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.52 45.0 3.52e-01 100.0% 75.6%
3789793 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 2.60e-01 100.0% 38.0%
3493793 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.51 44.0 3.13e-01 96.2% 45.8%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 4.03e-01 76.2% 93.8%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 38.0 4.01e-01 93.8% 91.4%