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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00201
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00201
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-78
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.91 | 79.0 | 6.04e-01 | 94.5% | 44.4% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.84 | 58.0 | 4.08e-01 | 72.7% | 24.8% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 65.0 | 6.59e-01 | 89.1% | 92.5% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 58.0 | 5.71e-01 | 89.1% | 75.0% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.75 | 46.0 | 3.18e-01 | 70.9% | 18.7% |
| 1t7lA02 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.69 | 58.0 | 3.52e-01 | 90.9% | 85.1% |
| 6ioyC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 52.0 | 3.48e-01 | 80.0% | 56.2% |
| 3p0hB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 48.0 | 3.07e-01 | 90.9% | 17.4% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.59 | 47.0 | 3.13e-01 | 87.3% | 53.9% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.57 | 46.0 | 3.88e-01 | 94.5% | 69.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3343260 | 192.15.1.123 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Na_H_Exchanger | 0.94 | 67.0 | 6.75e-01 | 74.5% | 74.5% |
| 4934254 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.93 | 64.0 | 4.54e-01 | 70.9% | 28.1% |
| 3412555 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.92 | 67.0 | 5.14e-01 | 78.2% | 38.2% |
| 4828003 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.86 | 78.0 | 5.94e-01 | 100.0% | 45.5% |
| 5043880 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.85 | 65.0 | 5.55e-01 | 83.6% | 52.9% |
| 3348367 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.84 | 71.0 | 4.10e-01 | 90.9% | 11.9% |
| 5014387 | 3826.1.1.100 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF2304 | 0.84 | 59.0 | 5.06e-01 | 74.5% | 48.2% |
| 5055565 | 192.15.1.224 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SHOCT | 0.81 | 64.0 | 4.84e-01 | 87.3% | 36.9% |
| 4231910 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.80 | 69.0 | 5.45e-01 | 94.5% | 64.5% |
| 3988856 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.79 | 59.0 | 5.40e-01 | 83.6% | 60.8% |
| 3687029 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.77 | 63.0 | 5.25e-01 | 90.9% | 87.4% |
| 5045248 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 55.0 | 4.79e-01 | 78.2% | 50.6% |
| 3680555 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.74 | 66.0 | 5.46e-01 | 98.2% | 57.9% |
| 4036632 | 192.15.1.47 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GvpK | 0.71 | 63.0 | 5.21e-01 | 98.2% | 90.5% |
D2
medium
residues 95-130_325-469
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07396.18 best | Porin_O_P | 82.6 | 4.60e-23 | 84.5% | 31.1% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o4vA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.88 | 86.0 | 6.28e-01 | 100.0% | 98.3% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.73 | 51.0 | 3.74e-01 | 80.1% | 30.2% |
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.72 | 68.0 | 5.35e-01 | 97.8% | 100.0% |
| 7vu0A01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.68 | 63.0 | 4.65e-01 | 96.7% | 99.8% |
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.67 | 52.0 | 3.64e-01 | 80.1% | 39.5% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.66 | 64.0 | 5.01e-01 | 100.0% | 98.5% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.66 | 62.0 | 4.63e-01 | 98.3% | 100.0% |
| 2pzhA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.66 | 27.0 | 3.16e-01 | 96.7% | 52.2% |
| 1fepA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.65 | 51.0 | 3.53e-01 | 80.1% | 39.9% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.65 | 60.0 | 4.63e-01 | 97.8% | 99.7% |
| 5dl7A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.65 | 60.0 | 4.54e-01 | 98.3% | 99.5% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.64 | 58.0 | 4.85e-01 | 95.0% | 100.0% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.64 | 58.0 | 4.33e-01 | 96.7% | 88.8% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.64 | 58.0 | 5.55e-01 | 95.6% | 100.0% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.63 | 49.0 | 4.14e-01 | 80.1% | 51.3% |
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 58.0 | 4.31e-01 | 97.8% | 99.5% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.63 | 59.0 | 4.46e-01 | 98.9% | 99.2% |
| 2vdfA00 | 2.40.128.100 | Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin | 0.62 | 56.0 | 5.19e-01 | 95.0% | 98.7% |
| 4meeA00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.62 | 56.0 | 4.61e-01 | 94.5% | 90.4% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.61 | 47.0 | 3.46e-01 | 80.1% | 49.1% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.61 | 55.0 | 3.81e-01 | 95.6% | 99.6% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.60 | 54.0 | 4.58e-01 | 95.6% | 98.6% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 54.0 | 3.60e-01 | 97.2% | 63.9% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.58 | 53.0 | 3.60e-01 | 96.1% | 84.9% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 45.0 | 4.86e-01 | 94.5% | 93.5% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 44.0 | 4.87e-01 | 93.9% | 97.3% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.57 | 35.0 | 4.23e-01 | 92.8% | 91.7% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.57 | 38.0 | 4.34e-01 | 84.5% | 91.0% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 43.0 | 4.08e-01 | 78.5% | 88.7% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.57 | 35.0 | 4.20e-01 | 92.8% | 92.4% |
| 1by5A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 52.0 | 3.67e-01 | 100.0% | 95.1% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.56 | 52.0 | 4.33e-01 | 98.9% | 83.6% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 44.0 | 4.85e-01 | 94.5% | 99.3% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.55 | 51.0 | 4.26e-01 | 98.9% | 91.0% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.55 | 50.0 | 4.43e-01 | 96.1% | 94.4% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 48.0 | 4.87e-01 | 95.0% | 95.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.54 | 47.0 | 4.27e-01 | 95.0% | 69.8% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.53 | 48.0 | 3.94e-01 | 95.6% | 88.9% |
| 3efmA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.53 | 49.0 | 3.65e-01 | 98.9% | 78.7% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.53 | 38.0 | 3.47e-01 | 75.1% | 62.2% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.51 | 46.0 | 3.84e-01 | 95.6% | 79.5% |
| 4l8oA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.28e-01 | 82.9% | 65.2% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.47e-01 | 86.2% | 76.3% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 43.0 | 4.44e-01 | 94.5% | 94.8% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4200093 | 5084.5.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_O_P | 0.88 | 85.0 | 6.39e-01 | 100.0% | 95.6% |
| 1694959 | 5084.5.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_O_P | 0.88 | 85.0 | 6.25e-01 | 100.0% | 98.3% |
| 3976326 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.73 | 45.0 | 4.59e-01 | 76.2% | 62.2% |
| 4213133 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.71 | 66.0 | 5.00e-01 | 96.7% | 100.0% |
| 2141087 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.70 | 66.0 | 5.15e-01 | 98.3% | 95.4% |
| 2410570 | 5084.5.1.14 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DcaP | 0.70 | 67.0 | 5.24e-01 | 100.0% | 100.0% |
| 4255354 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.70 | 67.0 | 4.92e-01 | 98.9% | 100.0% |
| 4622073 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.69 | 62.0 | 4.98e-01 | 93.9% | 94.8% |
| 3971211 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.69 | 65.0 | 4.85e-01 | 99.4% | 95.6% |
| 3971799 | 5084.5.2.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › DUF1302 | 0.69 | 65.0 | 4.52e-01 | 100.0% | 99.1% |
| 4156350 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.68 | 65.0 | 4.97e-01 | 100.0% | 98.9% |
| 1558583 | 5084.5.4.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › CymA | 0.67 | 63.0 | 5.18e-01 | 100.0% | 97.1% |
| 2321077 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.67 | 64.0 | 5.15e-01 | 100.0% | 98.4% |
| 3944481 | 5084.1.1.38 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Toluene_X | 0.67 | 52.0 | 5.71e-01 | 80.1% | 97.3% |
| 4458963 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.67 | 64.0 | 4.98e-01 | 100.0% | 95.5% |
| 1907333 | 5084.5.1.7 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Campylo_MOMP | 0.67 | 62.0 | 4.67e-01 | 97.8% | 97.3% |
| 4425267 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.67 | 63.0 | 4.71e-01 | 100.0% | 92.7% |
| 3387574 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.66 | 61.0 | 4.98e-01 | 96.7% | 88.1% |
| 5065294 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.66 | 39.0 | 4.09e-01 | 77.9% | 62.9% |
| 3969715 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.65 | 50.0 | 3.50e-01 | 79.0% | 38.1% |
| 4008544 | 5084.6.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx | 0.65 | 59.0 | 5.39e-01 | 95.6% | 99.1% |
| 3978611 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 59.0 | 4.78e-01 | 96.1% | 87.8% |
| 3970016 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.64 | 61.0 | 4.67e-01 | 100.0% | 95.8% |
| 3965708 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.64 | 50.0 | 4.48e-01 | 80.1% | 61.7% |
| 3967564 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.64 | 58.0 | 4.51e-01 | 96.1% | 93.3% |
| 4622159 | 5084.5.1.35 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 | 0.64 | 61.0 | 4.79e-01 | 100.0% | 99.4% |
| 4679157 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.63 | 59.0 | 4.50e-01 | 97.2% | 89.4% |
| 4039744 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 58.0 | 4.66e-01 | 96.1% | 87.7% |
| 3977722 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.63 | 57.0 | 5.44e-01 | 95.6% | 100.0% |
| 3974058 | 5084.5.1.28 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › CopB | 0.63 | 57.0 | 5.36e-01 | 94.5% | 95.7% |
| 3974124 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.62 | 57.0 | 4.85e-01 | 96.7% | 91.7% |
| 1294369 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 56.0 | 4.61e-01 | 94.5% | 90.4% |
| 3971597 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.62 | 56.0 | 4.46e-01 | 97.2% | 100.0% |
| 4075543 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.61 | 58.0 | 4.69e-01 | 97.2% | 96.4% |
| None | — | 0.61 | 57.0 | 4.64e-01 | 99.4% | 93.4% | |
| 3967063 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.60 | 54.0 | 4.60e-01 | 96.1% | 92.6% |
| 3980865 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.59 | 54.0 | 4.65e-01 | 96.1% | 91.9% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.59 | 38.0 | 4.56e-01 | 78.5% | 96.7% |
| 4683047 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.58 | 48.0 | 5.03e-01 | 93.9% | 93.9% |
| 1806543 | 5084.5.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel | 0.58 | 55.0 | 4.60e-01 | 100.0% | 86.9% |
| 3387592 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.58 | 53.0 | 4.18e-01 | 97.2% | 93.8% |
| 4006163 | 5084.5.4.13 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF481, Porin_OmpG | 0.58 | 53.0 | 4.38e-01 | 95.6% | 78.6% |
| 3839919 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.58 | 51.0 | 4.79e-01 | 94.5% | 96.8% |
| 4652295 | 5084.5.1.52 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › SlpA_C | 0.57 | 51.0 | 3.42e-01 | 93.4% | 99.5% |
| 3837982 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.57 | 49.0 | 4.94e-01 | 93.4% | 89.4% |
| 3964096 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.57 | 45.0 | 4.65e-01 | 94.5% | 85.7% |
| 3385673 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.57 | 44.0 | 4.72e-01 | 94.5% | 91.3% |
| 4537321 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.56 | 47.0 | 4.75e-01 | 94.5% | 87.8% |
| 4265077 | 5084.1.1.34 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 | 0.56 | 47.0 | 5.01e-01 | 93.9% | 98.1% |
| 4652602 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.56 | 51.0 | 4.18e-01 | 97.2% | 87.8% |
| 191268 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.56 | 44.0 | 4.85e-01 | 94.5% | 99.3% |
| 3974137 | 5084.5.1.69 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › B-barrel_PelB_C | 0.55 | 51.0 | 4.15e-01 | 96.7% | 98.1% |
| 3515197 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.55 | 37.0 | 3.88e-01 | 71.8% | 72.4% |
| 4285298 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.55 | 50.0 | 4.90e-01 | 94.5% | 94.7% |
| 3839687 | 5084.4.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 | 0.55 | 51.0 | 4.48e-01 | 97.8% | 99.6% |
| 4116729 | 5084.1.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF | 0.55 | 44.0 | 4.56e-01 | 93.9% | 88.8% |
| 3975352 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.55 | 43.0 | 4.71e-01 | 94.5% | 96.7% |
| 3388060 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.55 | 49.0 | 4.83e-01 | 94.5% | 94.7% |
| 3983528 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.55 | 52.0 | 4.59e-01 | 100.0% | 85.9% |
| 4099548 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.55 | 43.0 | 4.73e-01 | 94.5% | 98.7% |
| 4224449 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.55 | 47.0 | 4.81e-01 | 93.9% | 93.1% |
| 3165475 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.55 | 45.0 | 4.83e-01 | 94.5% | 98.7% |
| 3979477 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.55 | 47.0 | 3.50e-01 | 92.3% | 98.2% |
| 3387368 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.55 | 49.0 | 4.27e-01 | 94.5% | 82.6% |
| 4042627 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.54 | 47.0 | 4.91e-01 | 94.5% | 97.6% |
| 4512746 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.54 | 43.0 | 4.60e-01 | 94.5% | 93.7% |
| 3839675 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.54 | 48.0 | 4.88e-01 | 94.5% | 97.8% |
| 4299005 | 5084.1.1.21 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA | 0.54 | 49.0 | 4.82e-01 | 96.1% | 97.9% |
| 3837948 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.54 | 47.0 | 4.66e-01 | 93.9% | 92.1% |
| 4464084 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.53 | 48.0 | 4.51e-01 | 94.5% | 96.2% |
| 3840054 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.53 | 40.0 | 4.50e-01 | 82.9% | 100.0% |
| 4421608 | 5084.1.1.35 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Surface_Ag_2 | 0.53 | 47.0 | 4.28e-01 | 94.5% | 98.7% |
| 4419134 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 48.0 | 4.04e-01 | 95.6% | 79.3% |
| 3839432 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.52 | 47.0 | 4.44e-01 | 93.9% | 84.3% |
| 3975660 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.52 | 46.0 | 4.36e-01 | 94.5% | 99.1% |
| 3593049 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 37.0 | 3.53e-01 | 92.8% | 63.3% |
D3
medium
residues 179-324
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07396.18 best | Porin_O_P | 41.0 | 2.00e-10 | 87.7% | 28.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o4vA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.84 | 80.0 | 5.61e-01 | 100.0% | 38.9% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.68 | 38.0 | 4.41e-01 | 100.0% | 75.5% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.64 | 44.0 | 4.35e-01 | 100.0% | 65.8% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.62 | 41.0 | 4.25e-01 | 100.0% | 71.1% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.60 | 41.0 | 3.53e-01 | 100.0% | 46.1% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 41.0 | 4.16e-01 | 100.0% | 70.3% |
| 1tlyA00 | 2.40.230.20 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like | 0.56 | 46.0 | 3.78e-01 | 86.3% | 75.7% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.52 | 37.0 | 3.86e-01 | 73.3% | 98.5% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.51 | 30.0 | 3.52e-01 | 75.3% | 83.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4425267 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.71 | 59.0 | 4.15e-01 | 100.0% | 30.5% |
| 890 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.71 | 58.0 | 4.38e-01 | 100.0% | 37.9% |
| 3971211 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.67 | 60.0 | 4.25e-01 | 100.0% | 33.7% |
| 4880357 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.67 | 41.0 | 4.32e-01 | 100.0% | 67.2% |
| 3947513 | 5084.5.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB | 0.63 | 59.0 | 4.26e-01 | 100.0% | 38.1% |
| 4063158 | 5084.1.1.7 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP | 0.57 | 41.0 | 3.98e-01 | 99.3% | 66.1% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.56 | 41.0 | 3.94e-01 | 100.0% | 64.7% |
| None | — | 0.53 | 38.0 | 3.38e-01 | 74.0% | 76.3% | |
| 4537321 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.52 | 41.0 | 3.85e-01 | 100.0% | 67.2% |
| 4130771 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.51 | 43.0 | 3.98e-01 | 100.0% | 71.4% |
| 3272662 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 45.0 | 3.63e-01 | 100.0% | 96.3% |