←Back to structures
BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00221
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00221
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-85_180-191
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5l09B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.63 | 55.0 | 4.56e-01 | 100.0% | 72.0% |
| 5l10B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.59 | 52.0 | 4.26e-01 | 100.0% | 65.9% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.53 | 42.0 | 3.20e-01 | 88.8% | 50.0% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.52 | 44.0 | 4.11e-01 | 92.1% | 89.3% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 4.28e-01 | 91.0% | 90.6% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 4.15e-01 | 95.5% | 90.3% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 39.0 | 2.99e-01 | 85.4% | 77.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610286 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.66 | 59.0 | 4.11e-01 | 100.0% | 52.3% |
| 4190453 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.62 | 54.0 | 4.51e-01 | 100.0% | 68.5% |
| 3613894 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 3.42e-01 | 83.1% | 38.9% |
| 4586436 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.61 | 54.0 | 4.31e-01 | 100.0% | 62.8% |
| 4643976 | 101.1.2.654 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA | 0.60 | 46.0 | 3.77e-01 | 82.0% | 83.0% |
| 3716690 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.59 | 46.0 | 4.55e-01 | 85.4% | 80.0% |
| 3505390 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.56 | 48.0 | 4.08e-01 | 97.8% | 98.7% |
| 3509319 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 3.90e-01 | 87.6% | 93.1% |
| 2647290 | 225.1.1.6 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 | 0.54 | 34.0 | 3.61e-01 | 77.5% | 70.0% |
| 4479430 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.54 | 49.0 | 4.02e-01 | 100.0% | 63.7% |
| 3797719 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.88e-01 | 84.3% | 73.9% |
| 3680635 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.54 | 43.0 | 4.09e-01 | 87.6% | 90.5% |
| 3781175 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.53 | 45.0 | 3.37e-01 | 94.4% | 73.6% |
| 2775346 | 3636.1.1.1 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › HBB | 0.53 | 45.0 | 3.66e-01 | 100.0% | 97.4% |
| 1646873 | 304.6.1.2 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › ALO | 0.53 | 40.0 | 2.94e-01 | 80.9% | 63.8% |
| 3457076 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.53 | 38.0 | 3.00e-01 | 76.4% | 46.4% |
| 2694 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.52 | 43.0 | 4.23e-01 | 92.1% | 84.0% |
| 3450906 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.52 | 45.0 | 3.74e-01 | 100.0% | 88.8% |
| 4978103 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 41.0 | 3.54e-01 | 91.0% | 89.3% |
| 2482289 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.50 | 42.0 | 3.75e-01 | 93.3% | 93.0% |
D2
medium
residues 86-179_192-205
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00313__D82-179
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdqA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.63 | 53.0 | 4.07e-01 | 93.5% | 47.2% |
| 2fctB00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.62 | 54.0 | 3.94e-01 | 96.3% | 59.9% |
| 2fmyA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 42.0 | 3.92e-01 | 99.1% | 58.8% |
| 2yu2A01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.57 | 49.0 | 3.62e-01 | 93.5% | 54.4% |
| 1zx5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 34.0 | 3.74e-01 | 88.9% | 74.7% |
| 1nxmA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 39.0 | 3.20e-01 | 88.9% | 39.7% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 42.0 | 4.36e-01 | 88.9% | 84.8% |
| 6m9sD01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 38.0 | 3.92e-01 | 86.1% | 74.3% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 39.0 | 3.41e-01 | 87.0% | 48.8% |
| 3eqeA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 45.0 | 3.98e-01 | 88.9% | 64.1% |
| 3dv8A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 4.04e-01 | 99.1% | 67.6% |
| 1hw5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 43.0 | 4.11e-01 | 99.1% | 72.1% |
| 2gauA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 40.0 | 3.77e-01 | 99.1% | 63.5% |
| 5e44A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 3.83e-01 | 99.1% | 62.3% |
| 1sfpA00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.53 | 40.0 | 4.02e-01 | 90.7% | 78.4% |
| 1tme200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.46e-01 | 94.4% | 71.8% |
| 2vveA01 | 2.60.120.770 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 36.0 | 3.87e-01 | 89.8% | 81.7% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.36e-01 | 94.4% | 66.3% |
| 3mdpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 41.0 | 3.89e-01 | 98.1% | 68.7% |
| 5f29B00 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.52 | 30.0 | 3.43e-01 | 85.2% | 80.3% |
| 2rg4A01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.52 | 43.0 | 3.54e-01 | 90.7% | 49.5% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 3.72e-01 | 99.1% | 63.4% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 43.0 | 3.98e-01 | 99.1% | 72.4% |
| 2e63A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.51 | 41.0 | 3.62e-01 | 89.8% | 81.2% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 43.0 | 3.57e-01 | 89.8% | 57.5% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 42.0 | 3.98e-01 | 99.1% | 74.4% |
| 2b8mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 39.0 | 3.94e-01 | 89.8% | 80.7% |
| 1vj0B01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.50 | 38.0 | 3.07e-01 | 80.6% | 64.5% |
| 1o59A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 41.0 | 3.52e-01 | 89.8% | 75.7% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 38.0 | 3.83e-01 | 88.9% | 79.4% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 3.78e-01 | 89.8% | 79.2% |
| 1pgl100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.51e-01 | 91.7% | 80.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017936 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.70 | 39.0 | 3.87e-01 | 87.0% | 52.2% |
| 3260799 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 40.0 | 4.12e-01 | 89.8% | 65.7% |
| 4010115 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.63 | 50.0 | 4.45e-01 | 89.8% | 61.1% |
| 2325643 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.62 | 42.0 | 3.97e-01 | 99.1% | 57.0% |
| 3615533 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.61 | 52.0 | 4.06e-01 | 93.5% | 52.5% |
| 1558845 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.60 | 53.0 | 4.46e-01 | 95.4% | 75.1% |
| 3944453 | 10.12.1.18 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 | 0.60 | 50.0 | 4.50e-01 | 89.8% | 65.3% |
| 3945331 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.59 | 50.0 | 3.70e-01 | 90.7% | 47.4% |
| 4587586 | 10.12.1.15 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD | 0.59 | 40.0 | 3.34e-01 | 88.9% | 42.2% |
| 4929162 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 47.0 | 4.45e-01 | 88.9% | 80.0% |
| 3594137 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.56 | 48.0 | 3.62e-01 | 91.7% | 42.0% |
| 3923237 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 45.0 | 4.36e-01 | 90.7% | 100.0% |
| 3213308 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 44.0 | 3.78e-01 | 86.1% | 82.9% |
| 3282254 | 10.2.1.85 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rv1352 | 0.55 | 39.0 | 4.26e-01 | 95.4% | 91.1% |
| 3956157 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 41.0 | 3.78e-01 | 98.1% | 60.7% |
| 3497743 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.54 | 45.0 | 3.98e-01 | 89.8% | 62.6% |
| 3636445 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 44.0 | 3.85e-01 | 89.8% | 86.7% |
| 3220762 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.53 | 43.0 | 4.17e-01 | 90.7% | 98.4% |
| 4301645 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 42.0 | 3.87e-01 | 99.1% | 66.4% |
| 2845210 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 42.0 | 3.87e-01 | 99.1% | 66.4% |
| 3741391 | 11.1.1.471 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Kre9_KNH | 0.52 | 36.0 | 3.88e-01 | 79.6% | 84.4% |
| 4322758 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 40.0 | 3.78e-01 | 99.1% | 67.4% |
| 4122122 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.51 | 29.0 | 3.36e-01 | 82.4% | 81.4% |
| 5062005 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 41.0 | 3.96e-01 | 88.9% | 75.8% |
| 3164922 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.50 | 39.0 | 3.82e-01 | 100.0% | 75.0% |
| 3230629 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 41.0 | 3.64e-01 | 99.1% | 61.3% |
| 3395027 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 42.0 | 3.82e-01 | 93.5% | 100.0% |