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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00243
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kv2A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 51.0 | 4.36e-01 | 78.6% | 97.8% |
| 1wx8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 49.0 | 4.12e-01 | 78.6% | 74.0% |
| 1wmhB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 48.0 | 4.30e-01 | 80.4% | 96.3% |
| 1x1mA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.65 | 47.0 | 3.79e-01 | 76.8% | 80.4% |
| 6sjqA00 | 3.10.20.650 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 47.0 | 3.78e-01 | 78.6% | 77.4% |
| 1e7uA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 55.0 | 3.98e-01 | 100.0% | 56.9% |
| 1ryjA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.62 | 46.0 | 4.33e-01 | 82.1% | 91.4% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 49.0 | 4.04e-01 | 89.3% | 80.8% |
| 1euvB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 46.0 | 4.14e-01 | 82.1% | 91.1% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 44.0 | 3.98e-01 | 80.4% | 96.4% |
| 2bwfA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 45.0 | 4.05e-01 | 80.4% | 93.5% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 43.0 | 3.68e-01 | 78.6% | 88.8% |
| 4kdiD00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 43.0 | 3.93e-01 | 76.8% | 98.7% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.60 | 44.0 | 3.94e-01 | 82.1% | 83.7% |
| 5ip4E00 | 3.10.20.230 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain | 0.59 | 43.0 | 3.92e-01 | 82.1% | 95.2% |
| 4efoA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 42.0 | 3.74e-01 | 78.6% | 86.5% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.59 | 43.0 | 3.80e-01 | 82.1% | 79.1% |
| 4bfrB02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 50.0 | 3.88e-01 | 98.2% | 72.7% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 41.0 | 4.04e-01 | 80.4% | 89.2% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 43.0 | 3.73e-01 | 91.1% | 63.3% |
| 3ec6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 43.0 | 3.41e-01 | 89.3% | 57.8% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 43.0 | 3.48e-01 | 92.9% | 61.3% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.54 | 42.0 | 3.24e-01 | 83.9% | 67.2% |
| 4je3B00 | 3.10.20.720 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 38.0 | 3.52e-01 | 76.8% | 92.2% |
| 2y5pA00 | 2.60.40.4270 | Mainly Beta › Sandwich › Immunoglobulin-like › Listeria-Bacteroides repeat domain | 0.54 | 39.0 | 3.64e-01 | 80.4% | 91.7% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.59e-01 | 91.1% | 64.6% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 41.0 | 3.91e-01 | 92.9% | 82.2% |
| 3lz8B02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.53 | 36.0 | 3.25e-01 | 75.0% | 61.8% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 42.0 | 3.07e-01 | 98.2% | 47.8% |
| 1u6zA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.52 | 39.0 | 2.91e-01 | 89.3% | 74.9% |
| 4huzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 37.0 | 2.70e-01 | 78.6% | 71.1% |
| 1wspA00 | 2.40.240.130 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.52 | 40.0 | 3.65e-01 | 91.1% | 89.2% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.51 | 38.0 | 3.16e-01 | 85.7% | 74.6% |
| 1r94A00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.50 | 38.0 | 3.43e-01 | 94.6% | 93.8% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993658 | 221.1.1.170 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_ZFAND1 | 0.74 | 56.0 | 4.47e-01 | 80.4% | 77.1% |
| 3275839 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.72 | 54.0 | 4.48e-01 | 80.4% | 83.2% |
| 4113663 | 221.1.1.34 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › YukD | 0.70 | 52.0 | 4.67e-01 | 80.4% | 95.0% |
| 3793671 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.68 | 54.0 | 4.71e-01 | 87.5% | 98.8% |
| 3493901 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 51.0 | 4.30e-01 | 82.1% | 91.6% |
| 3258474 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.67 | 50.0 | 4.30e-01 | 80.4% | 85.2% |
| 3322127 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.67 | 50.0 | 4.35e-01 | 80.4% | 85.9% |
| 3592225 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 47.0 | 4.18e-01 | 76.8% | 89.4% |
| 3228311 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.66 | 50.0 | 4.10e-01 | 80.4% | 68.0% |
| 3505338 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 47.0 | 4.24e-01 | 76.8% | 92.5% |
| 3404934 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.65 | 51.0 | 4.33e-01 | 85.7% | 88.3% |
| 4023597 | 221.1.1.94 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 | 0.65 | 48.0 | 4.24e-01 | 80.4% | 95.3% |
| 3762141 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.65 | 48.0 | 4.08e-01 | 80.4% | 74.7% |
| 3446239 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.65 | 50.0 | 4.61e-01 | 85.7% | 89.3% |
| 4039263 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.65 | 47.0 | 4.53e-01 | 78.6% | 90.8% |
| 4480497 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.64 | 48.0 | 4.54e-01 | 82.1% | 84.3% |
| 4169889 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.64 | 47.0 | 4.43e-01 | 80.4% | 95.7% |
| 4867321 | 221.1.1.9 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd,PIK3CG_ABD | 0.64 | 56.0 | 4.03e-01 | 100.0% | 64.6% |
| 3167864 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.64 | 47.0 | 4.25e-01 | 78.6% | 94.7% |
| 3527416 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.63 | 49.0 | 4.18e-01 | 85.7% | 87.2% |
| 3460281 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.63 | 46.0 | 3.79e-01 | 78.6% | 68.9% |
| 4061290 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.63 | 47.0 | 4.37e-01 | 82.1% | 87.7% |
| 3546629 | 221.1.1.156 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_IARS1 | 0.63 | 47.0 | 4.01e-01 | 82.1% | 83.2% |
| 3962134 | 221.1.1.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 | 0.62 | 46.0 | 3.82e-01 | 80.4% | 88.3% |
| 4507733 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.62 | 44.0 | 4.08e-01 | 76.8% | 96.0% |
| 3703831 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.62 | 45.0 | 3.82e-01 | 78.6% | 100.0% |
| 3582435 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.62 | 50.0 | 4.30e-01 | 92.9% | 88.4% |
| 3304067 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 53.0 | 4.49e-01 | 100.0% | 69.7% |
| 3619962 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.62 | 47.0 | 4.13e-01 | 83.9% | 95.3% |
| 3225042 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.61 | 45.0 | 4.01e-01 | 80.4% | 84.7% |
| 2770682 | 221.1.1.62 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › BILBO1_N | 0.61 | 44.0 | 3.67e-01 | 78.6% | 80.4% |
| 5042815 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.61 | 45.0 | 4.10e-01 | 82.1% | 86.3% |
| 4370701 | 2003.1.1.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh | 0.61 | 50.0 | 3.33e-01 | 100.0% | 80.7% |
| 3430671 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.61 | 52.0 | 4.10e-01 | 100.0% | 56.8% |
| 3742708 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 47.0 | 3.87e-01 | 85.7% | 73.3% |
| 5041151 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.60 | 44.0 | 4.17e-01 | 80.4% | 100.0% |
| 3926235 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 44.0 | 3.95e-01 | 80.4% | 100.0% |
| 3390258 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 44.0 | 3.90e-01 | 82.1% | 90.6% |
| 3895615 | 221.1.1.19 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX | 0.59 | 45.0 | 3.91e-01 | 87.5% | 81.1% |
| 4946739 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.59 | 42.0 | 4.10e-01 | 78.6% | 89.2% |
| 4995785 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.59 | 41.0 | 4.12e-01 | 73.2% | 100.0% |
| 3725700 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 43.0 | 3.77e-01 | 82.1% | 100.0% |
| 3591547 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.57 | 41.0 | 3.40e-01 | 78.6% | 77.3% |
| 3839271 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.57 | 41.0 | 3.03e-01 | 78.6% | 76.1% |
| 4602886 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.56 | 40.0 | 3.77e-01 | 78.6% | 94.3% |
| 3166586 | 3470.1.1.43 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › PF29527 | 0.56 | 42.0 | 4.43e-01 | 80.4% | 92.0% |
| 185955 | 3428.1.1.1 ↗ | a+b two layers › hypothetical protein TA0743 › hypothetical protein TA0743 › hypothetical protein TA0743 › DUF2004 | 0.54 | 42.0 | 3.24e-01 | 83.9% | 67.2% |
| 3513559 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 42.0 | 3.31e-01 | 89.3% | 42.3% |
| 3700507 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.54 | 40.0 | 2.55e-01 | 87.5% | 14.0% |
| 395422 | 3156.1.1.11 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › DP-EP | 0.54 | 37.0 | 2.90e-01 | 71.4% | 63.1% |
| 3981692 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.54 | 35.0 | 2.25e-01 | 73.2% | 12.1% |
| 4998991 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.54 | 43.0 | 3.32e-01 | 92.9% | 55.7% |
| 3626414 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 45.0 | 4.11e-01 | 94.6% | 94.7% |
| 3690505 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.53 | 38.0 | 2.94e-01 | 78.6% | 35.7% |
| 4264098 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 3.21e-01 | 85.7% | 85.0% |
| 3271031 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.52 | 41.0 | 3.53e-01 | 98.2% | 86.2% |
| 3729168 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.51 | 37.0 | 2.56e-01 | 78.6% | 23.3% |
| 3397689 | 243.1.1.91 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518 | 0.51 | 40.0 | 3.08e-01 | 96.4% | 75.0% |