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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00257

Bact-Vir

BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00257

Identity

Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-144
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 39.0 4.30e-01 79.6% 91.8%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 32.0 3.06e-01 78.7% 45.1%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 39.0 4.22e-01 74.1% 100.0%
7jjtA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 39.0 4.19e-01 75.9% 97.7%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 39.0 4.04e-01 79.6% 88.2%
2cg9X01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.69e-01 70.4% 83.0%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 4.09e-01 77.8% 95.5%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.51 37.0 3.50e-01 86.1% 61.8%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 36.0 4.02e-01 79.6% 97.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598687 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 42.0 3.74e-01 78.7% 89.4%
3196339 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 38.0 3.65e-01 71.3% 61.5%
3508758 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 40.0 4.14e-01 82.4% 83.0%
4635237 12.1.1.52 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.54 41.0 4.21e-01 83.3% 100.0%
3611076 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 37.0 2.70e-01 77.8% 39.7%
2884685 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.51 40.0 3.47e-01 85.2% 88.3%
D2 medium residues 145-246
PDB
Domain cluster: representative
D3 medium residues 298-375
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hizA04 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.57 48.0 3.92e-01 100.0% 48.4%
1sq4A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.25e-01 74.4% 93.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2251 79.1.1.5 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › End_tail_spike 0.58 48.0 3.93e-01 100.0% 48.0%
4312891 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 34.0 2.65e-01 70.5% 77.8%
D4 medium residues 434-544
PDB
Domain cluster: representative
D5 medium residues 545-693
PDB
Domain cluster: representative