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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00269
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00269
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-72
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7k2tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 42.0 | 2.95e-01 | 76.4% | 32.1% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.56 | 42.0 | 4.01e-01 | 79.2% | 100.0% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 3.94e-01 | 93.1% | 68.8% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 3.97e-01 | 93.1% | 66.4% |
| 4g1gA02 | 2.70.20.60 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain | 0.53 | 43.0 | 3.36e-01 | 91.7% | 86.4% |
| 2omlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.53 | 42.0 | 3.79e-01 | 88.9% | 97.1% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.53 | 40.0 | 3.88e-01 | 83.3% | 98.8% |
| 2zw2A00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.52 | 40.0 | 3.84e-01 | 83.3% | 98.8% |
| 3n4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 39.0 | 3.30e-01 | 83.3% | 90.6% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.51 | 37.0 | 3.24e-01 | 80.6% | 61.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3223826 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.68 | 57.0 | 4.31e-01 | 91.7% | 68.2% |
| 3957852 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.63 | 57.0 | 4.87e-01 | 100.0% | 70.4% |
| 3244023 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.61 | 48.0 | 3.59e-01 | 84.7% | 88.3% |
| 3928439 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.61 | 50.0 | 3.26e-01 | 91.7% | 37.6% |
| 3948218 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.59 | 50.0 | 3.45e-01 | 94.4% | 34.3% |
| 4608078 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.58 | 38.0 | 2.49e-01 | 83.3% | 14.0% |
| 3481243 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 47.0 | 3.07e-01 | 94.4% | 66.1% |
| 4162386 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.57 | 45.0 | 3.47e-01 | 88.9% | 83.3% |
| 3386324 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.57 | 40.0 | 3.91e-01 | 73.6% | 100.0% |
| 3880678 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 43.0 | 3.51e-01 | 80.6% | 72.3% |
| 4015467 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.56 | 45.0 | 3.46e-01 | 91.7% | 79.5% |
| 3504461 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.56 | 47.0 | 3.74e-01 | 93.1% | 64.7% |
| 3504702 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 46.0 | 3.32e-01 | 94.4% | 39.1% |
| 4948356 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.55 | 46.0 | 3.61e-01 | 91.7% | 52.0% |
| 3871348 | 4004.1.1.2 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › AGK_C | 0.54 | 48.0 | 3.42e-01 | 97.2% | 61.9% |
| 3785573 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 44.0 | 3.76e-01 | 91.7% | 63.3% |
| 3684690 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.52 | 37.0 | 3.42e-01 | 81.9% | 60.0% |
| 4982252 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.31e-01 | 77.8% | 80.0% |
| 3592387 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 39.0 | 2.92e-01 | 84.7% | 100.0% |
| 3788630 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.50 | 37.0 | 3.17e-01 | 83.3% | 96.3% |
D2
medium
residues 73-123
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 49.0 | 4.96e-01 | 76.5% | 76.0% |
| 3k2oB02 | 1.20.1280.270 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.66 | 46.0 | 4.79e-01 | 78.4% | 95.6% |