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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00350
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00350
Identity
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 99-148
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zliA02 | 1.20.58.1370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 52.0 | 4.31e-01 | 74.0% | 42.4% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.75 | 63.0 | 3.71e-01 | 88.0% | 32.5% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 54.0 | 4.54e-01 | 82.0% | 61.7% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.67 | 54.0 | 3.73e-01 | 88.0% | 30.6% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.65 | 44.0 | 3.15e-01 | 72.0% | 48.7% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 3.32e-01 | 90.0% | 24.5% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.59 | 39.0 | 3.59e-01 | 72.0% | 53.8% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.58 | 40.0 | 3.47e-01 | 74.0% | 48.6% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.56 | 43.0 | 4.33e-01 | 92.0% | 84.6% |
| 2oyoA01 | 1.20.5.810 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like | 0.54 | 37.0 | 3.74e-01 | 76.0% | 90.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174920 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.85 | 60.0 | 4.94e-01 | 74.0% | 49.4% |
| 2546344 | 3826.1.1.1 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal | 0.80 | 58.0 | 5.42e-01 | 86.0% | 63.3% |
| 3963134 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.79 | 58.0 | 4.46e-01 | 98.0% | 37.1% |
| 3404898 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.77 | 60.0 | 4.70e-01 | 96.0% | 40.8% |
| 3224581 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.77 | 69.0 | 5.66e-01 | 96.0% | 58.8% |
| 4667807 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 61.0 | 4.44e-01 | 88.0% | 32.6% |
| 4450925 | 109.4.1.128 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 | 0.73 | 56.0 | 3.44e-01 | 82.0% | 31.6% |
| 3524358 | 2006.1.4.48 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DC_STAMP | 0.71 | 64.0 | 4.89e-01 | 96.0% | 59.0% |
| 3800963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 61.0 | 4.75e-01 | 100.0% | 45.5% |
| 4335352 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.69 | 56.0 | 3.36e-01 | 94.0% | 12.1% |
| 3717789 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.68 | 52.0 | 4.64e-01 | 82.0% | 97.1% |
| 3863960 | 219.1.1.80 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C | 0.59 | 50.0 | 3.59e-01 | 100.0% | 32.9% |
D2
medium
residues 1-82
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00171__D21-85
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 36.0 | 4.09e-01 | 70.7% | 83.9% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.60 | 38.0 | 4.09e-01 | 76.8% | 76.1% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 39.0 | 4.06e-01 | 76.8% | 74.4% |
| 3sftA00 | 3.40.50.180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain | 0.58 | 49.0 | 3.79e-01 | 95.1% | 93.1% |
| 3b4vD01 | 3.90.290.10 | Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain | 0.58 | 39.0 | 4.13e-01 | 70.7% | 81.4% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 42.0 | 4.50e-01 | 100.0% | 100.0% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.56 | 40.0 | 3.68e-01 | 75.6% | 59.8% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.56 | 40.0 | 3.63e-01 | 75.6% | 61.1% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.53 | 32.0 | 3.29e-01 | 80.5% | 59.7% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.53 | 38.0 | 3.29e-01 | 74.4% | 89.9% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.51 | 39.0 | 3.25e-01 | 82.9% | 81.2% |
| 2hfqA00 | 3.10.510.10 | Alpha Beta › Roll › NE1680-like fold › NE1680-like | 0.51 | 39.0 | 3.88e-01 | 81.7% | 97.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 35.0 | 3.39e-01 | 70.7% | 94.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.51 | 33.0 | 3.46e-01 | 72.0% | 72.4% |
| 1zr6A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 41.0 | 3.56e-01 | 93.9% | 66.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 38.0 | 4.46e-01 | 78.0% | 81.8% |
| 3970696 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.66 | 47.0 | 4.29e-01 | 76.8% | 77.9% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.65 | 39.0 | 4.38e-01 | 81.7% | 80.0% |
| 4958689 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.64 | 44.0 | 5.01e-01 | 80.5% | 98.3% |
| 5039344 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 49.0 | 4.85e-01 | 81.7% | 84.7% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 37.0 | 4.16e-01 | 81.7% | 76.9% |
| 3917008 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.59 | 42.0 | 4.33e-01 | 75.6% | 97.5% |
| 3554291 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.59 | 40.0 | 4.03e-01 | 76.8% | 69.9% |
| 3692317 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.50 | 42.0 | 2.83e-01 | 100.0% | 74.6% |
| 5061187 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.50 | 30.0 | 3.00e-01 | 70.7% | 53.3% |