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BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00437
Bact-VirBML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00437
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hg7A00 | 3.30.56.60 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like | 0.69 | 54.0 | 5.45e-01 | 88.1% | 93.3% |
| 1p2xA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.63 | 52.0 | 3.70e-01 | 88.1% | 93.7% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.60 | 43.0 | 3.91e-01 | 76.3% | 65.4% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.59 | 40.0 | 3.10e-01 | 72.9% | 36.5% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.58 | 43.0 | 3.40e-01 | 81.4% | 37.3% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 43.0 | 3.94e-01 | 83.1% | 65.4% |
| 2l3mA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.05e-01 | 81.4% | 73.2% |
| 2vjwA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 42.0 | 3.30e-01 | 81.4% | 100.0% |
| 2dulA02 | 3.30.56.70 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain | 0.57 | 39.0 | 3.94e-01 | 86.4% | 72.9% |
| 3p0tA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.57 | 36.0 | 2.86e-01 | 100.0% | 28.7% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.56 | 45.0 | 4.00e-01 | 94.9% | 72.6% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 42.0 | 4.00e-01 | 83.1% | 68.6% |
| 2dgrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 40.0 | 3.87e-01 | 76.3% | 74.6% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 41.0 | 3.85e-01 | 83.1% | 76.6% |
| 1sqgA03 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.55 | 37.0 | 3.79e-01 | 71.2% | 79.3% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.82e-01 | 83.1% | 69.9% |
| 3ip3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 42.0 | 3.00e-01 | 89.8% | 76.4% |
| 5i9eA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 41.0 | 3.51e-01 | 91.5% | 97.3% |
| 2ctlA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 43.0 | 3.70e-01 | 89.8% | 70.1% |
| 6dnwA01 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.54 | 37.0 | 3.03e-01 | 74.6% | 52.8% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 40.0 | 3.61e-01 | 86.4% | 83.5% |
| 2zy2A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 40.0 | 3.07e-01 | 84.7% | 62.1% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.53 | 40.0 | 3.92e-01 | 91.5% | 75.0% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 39.0 | 3.18e-01 | 84.7% | 94.0% |
| 1kn6A00 | 3.30.70.850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain | 0.53 | 38.0 | 3.61e-01 | 78.0% | 78.1% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.53 | 39.0 | 3.15e-01 | 86.4% | 39.3% |
| 2r31A02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.52 | 45.0 | 3.31e-01 | 100.0% | 49.4% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 35.0 | 3.59e-01 | 83.1% | 71.2% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 38.0 | 3.42e-01 | 83.1% | 91.0% |
| 2mzsA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 39.0 | 3.42e-01 | 88.1% | 59.6% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.51 | 38.0 | 3.53e-01 | 89.8% | 89.9% |
| 1qmhA01 | 3.65.10.20 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain | 0.51 | 39.0 | 2.69e-01 | 88.1% | 49.4% |
| 4rckA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 43.0 | 3.02e-01 | 96.6% | 50.5% |
| 6p58A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.06e-01 | 91.5% | 97.3% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.16e-01 | 83.1% | 53.2% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.51 | 40.0 | 2.98e-01 | 96.6% | 81.2% |
| 2k31A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 35.0 | 2.77e-01 | 76.3% | 97.3% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 40.0 | 3.54e-01 | 93.2% | 64.3% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 39.0 | 3.43e-01 | 89.8% | 62.9% |
| 1darA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 2.86e-01 | 100.0% | 38.0% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.50 | 40.0 | 3.15e-01 | 100.0% | 88.1% |
| 5mawD00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.50 | 40.0 | 2.78e-01 | 98.3% | 39.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4567341 | 4989.1.1.1 ↗ | a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW | 0.70 | 56.0 | 5.57e-01 | 88.1% | 93.3% |
| 4945 | 4989.1.1.1 ↗ | a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW | 0.69 | 54.0 | 5.45e-01 | 88.1% | 93.3% |
| 3442275 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.61 | 44.0 | 4.27e-01 | 81.4% | 71.4% |
| 5072739 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 47.0 | 4.28e-01 | 91.5% | 67.1% |
| 3713128 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.59 | 41.0 | 3.95e-01 | 74.6% | 75.7% |
| 4635761 | 304.48.1.26 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cmr2_N | 0.59 | 50.0 | 3.10e-01 | 100.0% | 25.3% |
| 159592 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.58 | 43.0 | 4.21e-01 | 81.4% | 77.3% |
| 4419572 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.58 | 42.0 | 3.37e-01 | 79.7% | 88.0% |
| 4944370 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.58 | 43.0 | 4.11e-01 | 81.4% | 74.3% |
| 5047370 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.58 | 41.0 | 3.98e-01 | 79.7% | 72.9% |
| 4981647 | 4070.1.1.4 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B | 0.57 | 45.0 | 3.23e-01 | 89.8% | 31.9% |
| 4979780 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 42.0 | 4.11e-01 | 81.4% | 80.0% |
| 4031944 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 42.0 | 3.93e-01 | 84.7% | 75.0% |
| 5019046 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.56 | 41.0 | 4.22e-01 | 83.1% | 92.7% |
| 4490258 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.56 | 38.0 | 2.43e-01 | 74.6% | 16.4% |
| 5050513 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.55 | 39.0 | 3.80e-01 | 78.0% | 74.3% |
| 3943916 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 43.0 | 4.16e-01 | 93.2% | 75.7% |
| 4953799 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 40.0 | 3.96e-01 | 81.4% | 80.0% |
| 4986569 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 43.0 | 3.60e-01 | 98.3% | 96.8% |
| 4277752 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.55 | 39.0 | 3.43e-01 | 78.0% | 97.9% |
| 4208827 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.55 | 44.0 | 3.24e-01 | 98.3% | 86.8% |
| 4680667 | 2493.1.1.2 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › Hpr_kinase_N | 0.55 | 42.0 | 3.38e-01 | 89.8% | 100.0% |
| 5015532 | 304.3.1.11 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE | 0.55 | 41.0 | 4.01e-01 | 88.1% | 77.9% |
| 4184537 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 37.0 | 2.30e-01 | 71.2% | 93.4% |
| 5056954 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.54 | 43.0 | 4.04e-01 | 89.8% | 70.7% |
| 2123445 | 1163.1.1.1 ↗ | alpha arrays › IcmS › IcmS › IcmS › T4bSS_IcmS | 0.54 | 44.0 | 3.65e-01 | 94.9% | 65.2% |
| 5048714 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.54 | 40.0 | 3.24e-01 | 86.4% | 97.9% |
| 4223966 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 37.0 | 3.76e-01 | 76.3% | 86.7% |
| 4963939 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 39.0 | 3.85e-01 | 81.4% | 81.5% |
| 3284383 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.53 | 39.0 | 3.50e-01 | 83.1% | 54.4% |
| 4142391 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 40.0 | 3.27e-01 | 93.2% | 41.5% |
| 4633568 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 39.0 | 3.34e-01 | 86.4% | 58.2% |
| 5058085 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.52 | 38.0 | 3.78e-01 | 88.1% | 86.2% |
| 5064038 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 38.0 | 3.52e-01 | 84.7% | 84.3% |
| 3973034 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 40.0 | 3.24e-01 | 94.9% | 87.4% |
| 4031138 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 36.0 | 3.59e-01 | 78.0% | 90.0% |
| 3603146 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.50 | 37.0 | 2.47e-01 | 83.1% | 92.6% |
| 4427482 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 36.0 | 3.13e-01 | 83.1% | 54.5% |
| 2559832 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.50 | 37.0 | 3.21e-01 | 84.7% | 74.3% |
D2
medium
residues 60-133
Domain cluster:
rep: HQ698895.1__AEX56016.1__S-CBS4_gp049__00049__D69-134
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16778.11 best | Phage_tail_APC | 43.8 | 2.70e-11 | 94.6% | 98.3% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 52.0 | 4.93e-01 | 73.0% | 67.0% |
| 2dw4A03 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.74 | 52.0 | 4.64e-01 | 73.0% | 74.3% |
| 4k7rA01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.74 | 56.0 | 3.56e-01 | 81.1% | 64.7% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.72 | 50.0 | 5.11e-01 | 73.0% | 78.1% |
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.71 | 64.0 | 4.92e-01 | 100.0% | 60.0% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 49.0 | 5.36e-01 | 73.0% | 98.3% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.70 | 49.0 | 4.74e-01 | 74.3% | 69.4% |
| 3pt1A02 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.69 | 62.0 | 5.29e-01 | 100.0% | 94.2% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.66 | 58.0 | 4.07e-01 | 100.0% | 79.6% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.65 | 57.0 | 4.01e-01 | 100.0% | 32.1% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.65 | 55.0 | 4.82e-01 | 100.0% | 73.8% |
| 4aurA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 3.79e-01 | 95.9% | 98.2% |
| 1cm5A00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.65 | 56.0 | 3.21e-01 | 98.6% | 67.6% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.65 | 57.0 | 4.90e-01 | 100.0% | 69.2% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.64 | 55.0 | 5.39e-01 | 100.0% | 96.3% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 55.0 | 4.41e-01 | 98.6% | 94.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 43.0 | 4.57e-01 | 71.6% | 91.9% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.63 | 53.0 | 4.01e-01 | 95.9% | 85.9% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.61 | 51.0 | 4.13e-01 | 95.9% | 55.0% |
| 6b4rA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.61 | 52.0 | 3.54e-01 | 95.9% | 45.4% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 41.0 | 4.47e-01 | 70.3% | 89.7% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 50.0 | 3.57e-01 | 100.0% | 99.6% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.59 | 40.0 | 3.44e-01 | 71.6% | 42.6% |
| 7eqeB01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 50.0 | 3.88e-01 | 95.9% | 67.5% |
| 5unhA02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 49.0 | 3.42e-01 | 100.0% | 94.5% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.58 | 52.0 | 4.76e-01 | 100.0% | 87.4% |
| 5azsC01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 48.0 | 3.10e-01 | 97.3% | 57.0% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.54 | 47.0 | 4.02e-01 | 97.3% | 85.0% |
| 5azpB01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 46.0 | 2.99e-01 | 100.0% | 54.7% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 42.0 | 3.16e-01 | 86.5% | 50.0% |
| 1wwmA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 44.0 | 3.48e-01 | 100.0% | 70.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4181677 | 192.29.1.272 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Val_tRNA-synt_C | 0.80 | 56.0 | 5.73e-01 | 71.6% | 80.0% |
| 4299170 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.80 | 55.0 | 5.67e-01 | 71.6% | 78.6% |
| 3973899 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.78 | 54.0 | 4.30e-01 | 71.6% | 40.7% |
| 3967403 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.77 | 52.0 | 5.54e-01 | 71.6% | 80.0% |
| 4367294 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.76 | 52.0 | 5.91e-01 | 70.3% | 98.1% |
| 3944501 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 50.0 | 4.94e-01 | 73.0% | 73.8% |
| 4007679 | 192.15.1.109 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Caudo_TAP | 0.72 | 63.0 | 6.37e-01 | 100.0% | 95.9% |
| 3973636 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 50.0 | 5.04e-01 | 73.0% | 96.0% |
| 3574069 | 604.12.1.62 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA | 0.72 | 50.0 | 4.20e-01 | 73.0% | 46.4% |
| 4174593 | 3922.1.1.248 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF25876 | 0.71 | 50.0 | 4.99e-01 | 73.0% | 97.3% |
| 3981585 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.70 | 49.0 | 4.94e-01 | 73.0% | 96.0% |
| 3969543 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.70 | 49.0 | 4.91e-01 | 73.0% | 74.7% |
| 3646869 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.70 | 60.0 | 3.93e-01 | 97.3% | 68.8% |
| 3510392 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.70 | 62.0 | 5.46e-01 | 100.0% | 90.9% |
| 3473827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.69 | 48.0 | 5.22e-01 | 73.0% | 100.0% |
| 3970792 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.69 | 62.0 | 5.26e-01 | 100.0% | 65.8% |
| 3422266 | 3562.1.1.0 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 | 0.68 | 61.0 | 5.11e-01 | 100.0% | 78.4% |
| 5015551 | 605.4.1.23 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF27339 | 0.67 | 58.0 | 5.66e-01 | 94.6% | 91.3% |
| 3330446 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.67 | 59.0 | 5.70e-01 | 100.0% | 96.5% |
| 3449004 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.67 | 58.0 | 4.55e-01 | 100.0% | 64.8% |
| 4426232 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.66 | 38.0 | 3.59e-01 | 100.0% | 46.7% |
| 4939305 | 7577.1.1.13 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › SepSecS | 0.66 | 49.0 | 3.12e-01 | 85.1% | 15.7% |
| 4194678 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 59.0 | 5.76e-01 | 100.0% | 96.2% |
| 3647744 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.66 | 46.0 | 3.93e-01 | 74.3% | 73.6% |
| 3398320 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 53.0 | 5.46e-01 | 100.0% | 95.7% |
| 4116362 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 56.0 | 5.47e-01 | 100.0% | 88.7% |
| 4363280 | 601.1.2.53 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DGKD_4H | 0.64 | 57.0 | 4.45e-01 | 100.0% | 51.2% |
| 3727157 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.64 | 55.0 | 4.61e-01 | 94.6% | 61.6% |
| 3323987 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.63 | 56.0 | 4.50e-01 | 100.0% | 66.2% |
| 3923888 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.62 | 53.0 | 3.89e-01 | 100.0% | 85.0% |
| 3753694 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.61 | 46.0 | 2.80e-01 | 82.4% | 52.7% |
| 4774645 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.61 | 49.0 | 3.78e-01 | 89.2% | 44.5% |
| 4670553 | 150.1.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PigN | 0.61 | 54.0 | 4.31e-01 | 100.0% | 72.0% |
| 5017845 | 632.7.1.67 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › YetF_N | 0.61 | 53.0 | 5.10e-01 | 100.0% | 85.9% |
| 3965953 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.60 | 52.0 | 3.52e-01 | 95.9% | 45.2% |
| 3797685 | 633.8.1.0 ↗ | alpha bundles › Bromodomain-like › MAST3 pre-PK domain-like › MAST3 pre-PK domain-like | 0.60 | 53.0 | 4.59e-01 | 98.6% | 81.7% |
| 3831937 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.59 | 51.0 | 3.40e-01 | 100.0% | 70.3% |
| 4638111 | 2004.1.1.483 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C | 0.59 | 51.0 | 2.86e-01 | 100.0% | 8.0% |
| 3805389 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.58 | 50.0 | 4.29e-01 | 100.0% | 72.8% |
| 3939354 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 50.0 | 4.12e-01 | 100.0% | 63.6% |
| 4879693 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.55 | 47.0 | 3.95e-01 | 100.0% | 62.8% |
| 3474795 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.54 | 43.0 | 3.17e-01 | 98.6% | 33.2% |
| 3224463 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.53 | 32.0 | 2.58e-01 | 97.3% | 27.1% |
| 174910 | 1.1.7.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 | 0.53 | 29.0 | 3.03e-01 | 100.0% | 53.6% |