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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00018
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00018
Identity
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-85
Domain cluster:
rep: MT408532.1__QJT70032.1__SynMITS9220M01_016__00016__D8-68
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.67 | 47.0 | 4.78e-01 | 73.2% | 100.0% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 46.0 | 3.87e-01 | 76.8% | 95.7% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 45.0 | 3.90e-01 | 80.5% | 79.5% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 33.0 | 3.50e-01 | 80.5% | 62.2% |
| 2ywwA01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.57 | 46.0 | 4.43e-01 | 87.8% | 76.9% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 39.0 | 3.49e-01 | 73.2% | 89.5% |
| 2nn6D00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 38.0 | 2.93e-01 | 75.6% | 82.4% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.54 | 28.0 | 3.33e-01 | 74.4% | 78.0% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 45.0 | 3.49e-01 | 100.0% | 71.8% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 32.0 | 3.59e-01 | 89.0% | 85.2% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 32.0 | 3.68e-01 | 91.5% | 93.1% |
| 4flnA02 | 3.20.190.20 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › | 0.50 | 35.0 | 2.96e-01 | 74.4% | 59.9% |
| 2aegA02 | 3.90.1680.20 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › | 0.50 | 38.0 | 3.18e-01 | 80.5% | 70.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924848 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.67 | 47.0 | 4.92e-01 | 73.2% | 90.7% |
| 3427984 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 45.0 | 4.29e-01 | 84.1% | 60.0% |
| 4028910 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.66 | 45.0 | 4.94e-01 | 70.7% | 92.3% |
| 3353030 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.65 | 47.0 | 4.48e-01 | 78.0% | 74.0% |
| 3333626 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.61 | 42.0 | 4.70e-01 | 70.7% | 96.7% |
| 3790574 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.60 | 41.0 | 3.67e-01 | 70.7% | 93.9% |
| 4963636 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 40.0 | 3.05e-01 | 72.0% | 63.4% |
| 4980673 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 40.0 | 3.63e-01 | 72.0% | 86.4% |
| 4223411 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.57 | 44.0 | 4.24e-01 | 84.1% | 100.0% |
| 3786120 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 33.0 | 3.96e-01 | 92.7% | 100.0% |
| 3813310 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.54 | 38.0 | 3.57e-01 | 75.6% | 90.5% |
| 3925464 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 38.0 | 3.85e-01 | 75.6% | 91.3% |
| 4009311 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.53 | 31.0 | 3.43e-01 | 74.4% | 72.3% |
| 3935843 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.53 | 39.0 | 4.02e-01 | 87.8% | 85.3% |
| 3440710 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 36.0 | 3.49e-01 | 75.6% | 84.0% |
| 5010299 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.51 | 24.0 | 2.94e-01 | 78.0% | 68.0% |
| 3587733 | 4980.1.1.0 ↗ | alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 | 0.50 | 41.0 | 4.06e-01 | 91.5% | 98.9% |
D2
high
residues 96-206_310-323
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jmxA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.90e-01 | 88.0% | 92.4% |
| 5t9pA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 31.0 | 3.57e-01 | 72.8% | 80.9% |
D3
high
residues 209-307
Domain cluster:
rep: MT408532.1__QJT70032.1__SynMITS9220M01_016__00016__D175-264