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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00027
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00027
Identity
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-62
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 3.60e-01 | 73.6% | 55.6% |
| 4a3vB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 45.0 | 4.09e-01 | 83.0% | 61.1% |
| 1fxrA00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 46.0 | 4.40e-01 | 86.8% | 90.6% |
| 3hruB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 47.0 | 3.72e-01 | 94.3% | 44.0% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.55 | 43.0 | 4.31e-01 | 96.2% | 87.5% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.55 | 37.0 | 3.18e-01 | 71.7% | 59.6% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.54 | 46.0 | 3.92e-01 | 100.0% | 60.4% |
| 3vkhB01 | 1.10.287.2620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.46e-01 | 96.2% | 57.8% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 43.0 | 2.86e-01 | 100.0% | 79.4% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 43.0 | 4.01e-01 | 98.1% | 100.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3251429 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.61 | 53.0 | 4.84e-01 | 98.1% | 97.1% |
| 5054477 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 45.0 | 4.59e-01 | 81.1% | 100.0% |
| 4974520 | 205.1.1.19 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 | 0.60 | 47.0 | 4.52e-01 | 88.7% | 90.5% |
| 3510945 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.50 | 41.0 | 2.81e-01 | 96.2% | 90.5% |
D2
high
residues 68-178
Domain cluster:
rep: NC_047714.1__YP_009778730.1__HOQ63_gp003__00003__D26-125