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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00070
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00070
Identity
- Kingdom:
- phage
Quality
97.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-57_130-172
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 41.0 | 4.33e-01 | 100.0% | 85.1% |
| 5c0yA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.54 | 41.0 | 4.18e-01 | 81.4% | 96.8% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.53 | 32.0 | 2.96e-01 | 96.9% | 45.0% |
| 4o8sA02 | 1.20.58.1790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain | 0.52 | 32.0 | 3.16e-01 | 93.8% | 54.2% |
D2
high
residues 65-120
Domain cluster:
rep: ON014754.1__UQS94893.1__Pam2_13__00013__D138-191
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvuB02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.73 | 65.0 | 4.38e-01 | 100.0% | 28.1% |
| 2cjlA02 | 3.30.20.10 | Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 | 0.72 | 64.0 | 6.23e-01 | 98.2% | 91.8% |
| 2z39A02 | 3.30.20.10 | Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 | 0.70 | 61.0 | 5.98e-01 | 98.2% | 89.8% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 33.0 | 3.38e-01 | 87.5% | 50.9% |
| 3e9eB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 43.0 | 2.86e-01 | 100.0% | 46.4% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.50 | 43.0 | 3.94e-01 | 100.0% | 87.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419141 | 235.1.1.2 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 | 0.85 | 55.0 | 4.08e-01 | 92.9% | 29.1% |
| 4821783 | 235.1.1.2 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 | 0.84 | 77.0 | 5.25e-01 | 100.0% | 31.5% |
| 3973873 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.83 | 77.0 | 5.02e-01 | 100.0% | 28.2% |
| 159294 | 235.1.1.2 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 | 0.72 | 65.0 | 4.35e-01 | 100.0% | 27.3% |
| 3878373 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.61 | 38.0 | 3.55e-01 | 98.2% | 50.0% |
| None | — | 0.58 | 47.0 | 2.67e-01 | 91.1% | 14.0% | |
| 4588058 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.51 | 43.0 | 2.84e-01 | 100.0% | 68.9% |