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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00096
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00096
Identity
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-67
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.82 | 61.0 | 6.73e-01 | 92.9% | 95.7% |
| 3dzaA02 | 6.10.250.2140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 50.0 | 4.84e-01 | 73.2% | 56.5% |
| 1gp8A00 | 4.10.810.10 | Few Secondary Structures › Irregular › Virus Scaffolding Protein; Chain A › Virus Scaffolding Protein; Chain A | 0.81 | 52.0 | 5.97e-01 | 85.7% | 92.5% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 64.0 | 4.34e-01 | 98.2% | 27.4% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.77 | 60.0 | 6.27e-01 | 96.4% | 90.2% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 59.0 | 3.79e-01 | 85.7% | 23.5% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.74 | 54.0 | 5.00e-01 | 92.9% | 60.6% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.74 | 58.0 | 6.26e-01 | 85.7% | 100.0% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.72 | 60.0 | 4.36e-01 | 91.1% | 76.2% |
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.72 | 53.0 | 4.47e-01 | 94.6% | 47.3% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.71 | 55.0 | 6.04e-01 | 85.7% | 97.9% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.70 | 57.0 | 5.14e-01 | 92.9% | 64.5% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 57.0 | 5.39e-01 | 100.0% | 77.3% |
| 2xzmI00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.68 | 52.0 | 3.99e-01 | 87.5% | 78.3% |
| 7k3zG01 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.67 | 53.0 | 3.51e-01 | 83.9% | 26.3% |
| 3vnxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 60.0 | 4.08e-01 | 100.0% | 38.5% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.60 | 52.0 | 3.62e-01 | 100.0% | 67.3% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.59 | 44.0 | 3.66e-01 | 80.4% | 66.3% |
| 1iq0A03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 46.0 | 3.73e-01 | 92.9% | 63.8% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 46.0 | 3.89e-01 | 98.2% | 60.0% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.11e-01 | 96.4% | 33.0% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.21e-01 | 89.3% | 69.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3727979 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 64.0 | 4.14e-01 | 78.6% | 19.1% |
| 3671587 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.87 | 63.0 | 4.29e-01 | 75.0% | 40.6% |
| 4419795 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.85 | 58.0 | 6.74e-01 | 92.9% | 100.0% |
| 3597976 | 2484.8.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) | 0.84 | 59.0 | 3.84e-01 | 73.2% | 81.4% |
| 3458315 | 109.4.1.1382 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_24 | 0.82 | 65.0 | 3.66e-01 | 83.9% | 49.2% |
| 3360337 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.82 | 56.0 | 6.52e-01 | 83.9% | 100.0% |
| 4324075 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.79 | 59.0 | 6.34e-01 | 87.5% | 91.7% |
| 5068187 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 61.0 | 5.50e-01 | 92.9% | 62.2% |
| 5062733 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.78 | 60.0 | 5.74e-01 | 92.9% | 70.8% |
| 5060017 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 55.0 | 5.21e-01 | 91.1% | 64.6% |
| 3728966 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 59.0 | 3.82e-01 | 82.1% | 31.9% |
| 3321930 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.75 | 54.0 | 3.92e-01 | 78.6% | 30.6% |
| 3374699 | 604.12.1.7 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1_C | 0.73 | 55.0 | 6.00e-01 | 98.2% | 100.0% |
| 4377686 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.73 | 61.0 | 3.40e-01 | 91.1% | 29.5% |
| 3249136 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 3.84e-01 | 96.4% | 61.3% |
| 3185134 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.65 | 55.0 | 3.44e-01 | 98.2% | 21.8% |
| 4286656 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.64 | 50.0 | 4.09e-01 | 89.3% | 44.5% |
| 2080415 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 46.0 | 3.26e-01 | 92.9% | 22.9% |