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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00100
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00100
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-75
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
D2
high
residues 152-204
Domain cluster:
rep: ON526839.1__URG17631.1__GRN51_150__00015__D54-100
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 68.0 | 6.25e-01 | 100.0% | 73.5% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.69 | 47.0 | 4.07e-01 | 100.0% | 46.9% |
| 3hh2D03 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.66 | 41.0 | 4.51e-01 | 100.0% | 84.6% |
| 2cyjA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.61 | 51.0 | 4.09e-01 | 100.0% | 82.9% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 41.0 | 3.94e-01 | 100.0% | 62.3% |
| 3ckjA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 49.0 | 3.09e-01 | 100.0% | 74.7% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.57 | 42.0 | 3.86e-01 | 81.1% | 72.6% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.56 | 40.0 | 4.10e-01 | 77.4% | 94.0% |
| 1ihnA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.55 | 43.0 | 3.62e-01 | 98.1% | 81.4% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 37.0 | 3.86e-01 | 73.6% | 100.0% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 39.0 | 3.08e-01 | 84.9% | 62.3% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 45.0 | 4.56e-01 | 98.1% | 100.0% |
| 2mkxA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.53 | 40.0 | 4.14e-01 | 83.0% | 92.2% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.53 | 40.0 | 4.24e-01 | 83.0% | 100.0% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.98e-01 | 90.6% | 98.3% |
| 6xiuA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 40.0 | 3.37e-01 | 90.6% | 50.5% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.85e-01 | 98.1% | 89.5% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.50 | 37.0 | 2.89e-01 | 81.1% | 76.0% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.52e-01 | 94.3% | 69.0% |
| 4f4oC03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 43.0 | 3.63e-01 | 100.0% | 57.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.81 | 68.0 | 6.22e-01 | 100.0% | 72.5% |
| 3933682 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.70 | 47.0 | 3.69e-01 | 100.0% | 33.0% |
| 5028609 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.70 | 42.0 | 4.32e-01 | 94.3% | 64.0% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.70 | 58.0 | 5.07e-01 | 100.0% | 61.2% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.67 | 55.0 | 5.14e-01 | 100.0% | 73.9% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.63 | 50.0 | 5.09e-01 | 96.2% | 98.0% |
| 3805835 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.61 | 51.0 | 3.29e-01 | 96.2% | 26.8% |
| 5047649 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.61 | 37.0 | 3.78e-01 | 73.6% | 60.0% |
| 5064906 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.60 | 37.0 | 3.74e-01 | 77.4% | 58.2% |
| 4181286 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.60 | 37.0 | 3.87e-01 | 77.4% | 68.9% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.59 | 36.0 | 3.68e-01 | 73.6% | 60.0% |
| 4944138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 45.0 | 3.72e-01 | 86.8% | 56.2% |
| 4191032 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.59 | 36.0 | 3.70e-01 | 75.5% | 60.0% |
| 4933561 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.59 | 36.0 | 3.66e-01 | 77.4% | 58.2% |
| 5021970 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 44.0 | 3.72e-01 | 86.8% | 72.0% |
| 3960483 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.58 | 36.0 | 3.67e-01 | 75.5% | 62.0% |
| 4943773 | 297.1.1.2 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC | 0.58 | 47.0 | 3.28e-01 | 100.0% | 82.3% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 42.0 | 3.87e-01 | 79.2% | 92.9% |
| 3296049 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.57 | 51.0 | 3.34e-01 | 100.0% | 32.1% |
| 4019840 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.57 | 48.0 | 3.78e-01 | 100.0% | 100.0% |
| 3869669 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.55 | 41.0 | 3.51e-01 | 86.8% | 74.0% |
| 3969916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 41.0 | 3.75e-01 | 79.2% | 71.4% |
| 3482975 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.55 | 40.0 | 3.22e-01 | 84.9% | 46.4% |
| 3992794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 45.0 | 2.95e-01 | 100.0% | 28.5% |
| 3278866 | 221.1.2.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › DUF1062 | 0.54 | 39.0 | 3.78e-01 | 94.3% | 71.7% |
| 4249176 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.54 | 40.0 | 3.90e-01 | 81.1% | 80.0% |
| 3974460 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.53 | 37.0 | 2.87e-01 | 73.6% | 52.3% |
| 3281871 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.52 | 36.0 | 2.86e-01 | 73.6% | 58.3% |