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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00103

Bact-Vir

BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00103

Identity

Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-126
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gv2A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.75 70.0 5.51e-01 100.0% 70.5%
1gs0A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.74 68.0 5.40e-01 100.0% 68.4%
3b82B00 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.73 67.0 5.38e-01 100.0% 62.8%
7rb4A01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.71 65.0 5.25e-01 100.0% 85.2%
2x5yA00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.70 63.0 5.35e-01 100.0% 62.0%
2rf5A00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.70 65.0 5.18e-01 100.0% 58.5%
3hkvA00 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.68 63.0 5.17e-01 100.0% 60.9%
4kruA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 45.0 3.66e-01 74.5% 93.9%
2wagA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 46.0 3.70e-01 76.4% 96.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908660 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.78 73.0 6.51e-01 100.0% 76.0%
3905755 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.78 73.0 6.87e-01 100.0% 94.6%
3727394 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.76 70.0 5.29e-01 100.0% 63.2%
4125268 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.75 55.0 6.09e-01 100.0% 92.2%
3241341 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.75 70.0 5.63e-01 100.0% 69.0%
3694624 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.75 70.0 5.22e-01 100.0% 61.3%
3798868 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.75 70.0 5.33e-01 100.0% 60.4%
3536040 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.75 69.0 5.46e-01 100.0% 58.6%
3268811 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.74 69.0 5.46e-01 100.0% 58.9%
3242389 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.74 69.0 5.14e-01 100.0% 57.3%
3252897 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.74 69.0 5.47e-01 100.0% 65.7%
3256269 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.74 62.0 6.34e-01 100.0% 91.4%
3920549 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.73 58.0 4.91e-01 100.0% 53.5%
3258058 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.73 67.0 5.38e-01 100.0% 53.2%
3997265 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.72 67.0 5.31e-01 100.0% 62.4%
3324343 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.72 67.0 5.43e-01 100.0% 60.1%
3618823 237.1.1.18 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF3715 0.71 65.0 5.16e-01 100.0% 60.9%
3453008 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.67 62.0 4.95e-01 100.0% 54.3%
3829979 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.65 60.0 4.73e-01 100.0% 52.2%
3555152 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.64 60.0 4.96e-01 100.0% 64.9%
3560874 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 59.0 4.88e-01 100.0% 74.2%
3250305 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.63 58.0 4.81e-01 100.0% 65.4%
3185451 237.1.1.1 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.61 56.0 4.50e-01 100.0% 53.5%
3183175 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.59 52.0 4.58e-01 100.0% 65.0%
None — 0.51 43.0 2.87e-01 92.7% 42.4%
4246182 7577.1.1.20 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5+GDC-P 0.51 43.0 3.01e-01 92.7% 52.5%
2607180 7577.1.1.8 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Beta_elim_lyase 0.51 43.0 3.21e-01 92.7% 59.2%
3489028 7577.1.1.10 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › GDC-P 0.51 43.0 3.08e-01 92.7% 58.8%
3515740 7577.1.1.0 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases 0.51 42.0 3.22e-01 92.7% 75.7%
4955378 7577.1.1.3 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.51 42.0 2.94e-01 92.7% 56.4%
4956960 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.50 38.0 3.16e-01 82.7% 98.6%