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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00179
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00179
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-117
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 25.9 | 8.20e-06 | 38.3% | 87.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.88 | 73.0 | 7.58e-01 | 100.0% | 92.5% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.55 | 26.0 | 3.17e-01 | 75.7% | 69.7% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 27.0 | 3.21e-01 | 70.4% | 76.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.83 | 76.0 | 7.63e-01 | 99.1% | 95.7% |
| 3965202 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.75 | 66.0 | 6.79e-01 | 98.3% | 97.3% |
| 3411296 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.58 | 34.0 | 3.37e-01 | 90.4% | 54.2% |
| 3978060 | 4023.1.1.3 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 | 0.54 | 30.0 | 3.22e-01 | 86.1% | 60.0% |
| 1146580 | 3308.1.1.2 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme › CarG-like | 0.53 | 34.0 | 3.14e-01 | 92.2% | 47.5% |
| 3897512 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.52 | 31.0 | 3.59e-01 | 70.4% | 83.7% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 27.0 | 3.32e-01 | 90.4% | 86.2% |
| 3226744 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 30.0 | 3.39e-01 | 93.0% | 75.6% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 24.0 | 3.24e-01 | 70.4% | 96.0% |