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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00184
Bact-VirBML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00184
Identity
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-72
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.71 | 55.0 | 4.05e-01 | 82.1% | 42.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 54.0 | 5.18e-01 | 82.1% | 88.2% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 53.0 | 4.34e-01 | 82.1% | 95.9% |
| 5o46A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 56.0 | 4.73e-01 | 89.6% | 91.2% |
| 3dsmA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.69 | 55.0 | 3.44e-01 | 85.1% | 41.3% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.67 | 58.0 | 4.58e-01 | 100.0% | 69.6% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.67 | 54.0 | 4.53e-01 | 89.6% | 61.9% |
| 8hpoK01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 52.0 | 3.20e-01 | 85.1% | 21.9% |
| 4n6mB00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 54.0 | 4.51e-01 | 89.6% | 94.8% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.66 | 51.0 | 4.25e-01 | 83.6% | 53.4% |
| 1wgeA00 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.65 | 43.0 | 4.09e-01 | 91.0% | 55.4% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 51.0 | 4.29e-01 | 86.6% | 97.4% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.65 | 57.0 | 3.59e-01 | 98.5% | 73.0% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.64 | 52.0 | 3.83e-01 | 89.6% | 80.8% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 56.0 | 4.53e-01 | 100.0% | 74.4% |
| 2ch9A01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 50.0 | 4.30e-01 | 89.6% | 95.6% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 55.0 | 4.52e-01 | 100.0% | 71.1% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 49.0 | 3.24e-01 | 85.1% | 31.8% |
| 2iecD00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.62 | 45.0 | 3.74e-01 | 76.1% | 83.8% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.62 | 54.0 | 4.45e-01 | 100.0% | 52.8% |
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 52.0 | 3.63e-01 | 92.5% | 54.2% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 49.0 | 3.80e-01 | 88.1% | 47.1% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.61 | 53.0 | 3.48e-01 | 97.0% | 86.1% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 51.0 | 3.56e-01 | 92.5% | 57.8% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.60 | 50.0 | 3.82e-01 | 94.0% | 48.2% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 51.0 | 4.02e-01 | 100.0% | 71.3% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 52.0 | 3.90e-01 | 98.5% | 72.4% |
| 5h9kA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 50.0 | 3.97e-01 | 100.0% | 65.6% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 51.0 | 4.08e-01 | 100.0% | 78.9% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 49.0 | 3.33e-01 | 100.0% | 87.5% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 53.0 | 3.49e-01 | 100.0% | 97.4% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 49.0 | 3.86e-01 | 98.5% | 70.3% |
| 2uvaG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 50.0 | 4.04e-01 | 100.0% | 52.2% |
| 3cerA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.58 | 42.0 | 2.99e-01 | 76.1% | 37.3% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 51.0 | 4.11e-01 | 100.0% | 69.0% |
| 1mu5A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 49.0 | 3.51e-01 | 97.0% | 51.0% |
| 2zxqA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 45.0 | 3.41e-01 | 89.6% | 42.0% |
| 1orvA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.57 | 45.0 | 2.81e-01 | 92.5% | 23.0% |
| 3gveA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.57 | 48.0 | 3.16e-01 | 100.0% | 79.3% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.56 | 45.0 | 3.80e-01 | 88.1% | 59.5% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 46.0 | 3.25e-01 | 97.0% | 53.7% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 43.0 | 4.48e-01 | 97.0% | 88.9% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 46.0 | 3.77e-01 | 100.0% | 58.3% |
| 3cnwA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 47.0 | 3.78e-01 | 100.0% | 46.8% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 47.0 | 3.85e-01 | 100.0% | 85.6% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 43.0 | 3.67e-01 | 95.5% | 54.1% |
| 4xa2A01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.54 | 45.0 | 3.85e-01 | 95.5% | 84.1% |
| 3louA02 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.53 | 44.0 | 3.16e-01 | 92.5% | 73.1% |
| 2gprA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.52 | 46.0 | 3.53e-01 | 100.0% | 84.4% |
| 1f3zA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.51 | 44.0 | 3.46e-01 | 100.0% | 66.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4436313 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.73 | 65.0 | 5.88e-01 | 100.0% | 76.7% |
| 3681710 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.73 | 53.0 | 4.66e-01 | 76.1% | 56.8% |
| 3493824 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.73 | 53.0 | 3.31e-01 | 77.6% | 15.1% |
| 3925421 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.72 | 59.0 | 5.19e-01 | 89.6% | 96.0% |
| 5056218 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.72 | 51.0 | 5.11e-01 | 77.6% | 72.9% |
| 3584211 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.71 | 56.0 | 4.29e-01 | 83.6% | 88.3% |
| 1146580 | 3308.1.1.2 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme › CarG-like | 0.71 | 58.0 | 4.39e-01 | 89.6% | 86.7% |
| 3657035 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.70 | 56.0 | 4.96e-01 | 89.6% | 88.0% |
| 3261797 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.70 | 59.0 | 3.67e-01 | 92.5% | 58.1% |
| 2388204 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.69 | 56.0 | 4.72e-01 | 89.6% | 91.2% |
| 4121383 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.69 | 60.0 | 3.85e-01 | 97.0% | 83.5% |
| 3454914 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.69 | 56.0 | 4.90e-01 | 89.6% | 89.0% |
| 3817253 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.68 | 51.0 | 3.79e-01 | 79.1% | 47.6% |
| 3783275 | 243.3.1.64 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF29059 | 0.68 | 57.0 | 4.80e-01 | 100.0% | 56.0% |
| 3743855 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.68 | 59.0 | 3.68e-01 | 97.0% | 67.4% |
| 3668180 | 9.2.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N | 0.67 | 60.0 | 4.15e-01 | 100.0% | 88.9% |
| 3484711 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.66 | 58.0 | 3.60e-01 | 97.0% | 79.7% |
| 2701923 | 243.3.1.6 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin | 0.66 | 53.0 | 4.71e-01 | 89.6% | 92.9% |
| 5024957 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.66 | 49.0 | 4.66e-01 | 80.6% | 67.1% |
| 865437 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.66 | 57.0 | 4.44e-01 | 100.0% | 67.5% |
| 3832160 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.65 | 54.0 | 4.43e-01 | 94.0% | 85.4% |
| 3665166 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.64 | 56.0 | 3.60e-01 | 97.0% | 75.6% |
| 3170704 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 51.0 | 3.16e-01 | 88.1% | 37.1% |
| 3298515 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.62 | 53.0 | 4.54e-01 | 98.5% | 73.0% |
| 3494031 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.60 | 46.0 | 3.56e-01 | 82.1% | 97.9% |
| 4245376 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.59 | 42.0 | 4.41e-01 | 73.1% | 100.0% |
| 3851235 | 11.1.5.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › RHD_DNA_bind | 0.59 | 52.0 | 3.56e-01 | 100.0% | 77.1% |
| 5068436 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 49.0 | 3.28e-01 | 91.0% | 78.7% |
| 5045702 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.57 | 47.0 | 3.17e-01 | 89.6% | 77.2% |
| 2134443 | 274.1.1.1 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin | 0.56 | 44.0 | 3.86e-01 | 88.1% | 66.7% |
| 6323 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.56 | 46.0 | 3.79e-01 | 100.0% | 59.6% |
| 3269927 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.55 | 46.0 | 4.08e-01 | 100.0% | 73.1% |
| 3719418 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 2.76e-01 | 95.5% | 61.3% |
| 4887387 | 4010.1.1.1 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 | 0.54 | 46.0 | 3.50e-01 | 100.0% | 43.4% |
| 5040443 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.53 | 45.0 | 3.05e-01 | 92.5% | 69.2% |
| 3338367 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 45.0 | 3.59e-01 | 100.0% | 65.9% |
| 3997946 | 708.1.1.16 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC | 0.51 | 41.0 | 3.17e-01 | 97.0% | 45.6% |