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BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00286

Bact-Vir

BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00286

Identity

Kingdom:
phage

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-44
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.84 73.0 6.97e-01 100.0% 90.0%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.84 62.0 4.57e-01 100.0% 31.2%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.83 71.0 5.99e-01 100.0% 72.4%
3k7mX02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.78 67.0 4.31e-01 100.0% 35.0%
5uaoC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.77 66.0 3.72e-01 100.0% 13.8%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 61.0 5.17e-01 100.0% 98.6%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 52.0 3.86e-01 100.0% 33.9%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 52.0 3.87e-01 100.0% 35.1%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 52.0 3.55e-01 100.0% 31.8%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 53.0 3.57e-01 97.7% 23.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.07e-01 95.3% 81.1%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 52.0 4.27e-01 100.0% 49.4%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 52.0 3.30e-01 100.0% 22.7%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 52.0 3.53e-01 97.7% 24.8%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 51.0 4.82e-01 100.0% 89.1%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 50.0 4.31e-01 97.7% 100.0%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 50.0 3.20e-01 95.3% 28.8%
1n6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 3.85e-01 100.0% 44.3%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 48.0 3.78e-01 100.0% 41.1%
2g0cA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 48.0 4.26e-01 95.3% 100.0%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 46.0 3.04e-01 95.3% 32.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 49.0 4.15e-01 100.0% 82.3%
2i0oA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 48.0 3.04e-01 100.0% 18.8%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.59 44.0 4.54e-01 100.0% 90.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 48.0 3.92e-01 100.0% 52.2%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 48.0 3.87e-01 95.3% 91.5%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.58 47.0 3.16e-01 100.0% 39.5%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.50e-01 100.0% 87.5%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 51.0 3.72e-01 100.0% 97.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 47.0 3.32e-01 100.0% 28.7%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 51.0 3.96e-01 97.7% 64.4%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 47.0 3.66e-01 100.0% 98.1%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 46.0 3.32e-01 100.0% 28.9%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.57e-01 100.0% 44.6%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 3.18e-01 100.0% 34.0%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 47.0 3.38e-01 100.0% 88.6%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 43.0 3.34e-01 100.0% 91.9%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 43.0 3.72e-01 95.3% 100.0%
1nepA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.25e-01 100.0% 46.2%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.54 42.0 3.35e-01 100.0% 55.0%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.13e-01 100.0% 36.7%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 39.0 3.07e-01 83.7% 60.9%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 2.93e-01 86.0% 28.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.53 35.0 3.42e-01 100.0% 60.0%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.53 43.0 2.77e-01 100.0% 20.3%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 38.0 2.57e-01 79.1% 92.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.27e-01 100.0% 42.9%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 38.0 2.96e-01 100.0% 78.6%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.30e-01 100.0% 46.7%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 37.0 2.72e-01 81.4% 63.1%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 41.0 3.08e-01 100.0% 43.9%
2hc8A00 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.50 43.0 3.22e-01 100.0% 61.9%
1g13A00 2.70.220.10 Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator 0.50 39.0 2.84e-01 97.7% 55.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.97 90.0 8.49e-01 100.0% 86.0%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.92 82.0 8.11e-01 97.7% 95.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.91 81.0 7.97e-01 100.0% 93.3%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.90 80.0 7.94e-01 100.0% 93.3%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.88 76.0 7.53e-01 100.0% 93.3%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.86 74.0 7.06e-01 100.0% 84.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.85 73.0 7.01e-01 100.0% 84.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.83 75.0 7.13e-01 100.0% 90.0%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 70.0 5.85e-01 100.0% 96.0%
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.79 69.0 5.18e-01 100.0% 41.0%
5007155 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.76 64.0 6.40e-01 100.0% 93.3%
3959769 304.169.1.0 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain 0.71 62.0 4.90e-01 97.7% 72.9%
3953110 101.1.2.794 alpha arrays › HTH › HTH › winged helix domain › WCX 0.70 61.0 4.92e-01 97.7% 76.2%
3288892 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.68 57.0 5.71e-01 100.0% 93.3%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 3.58e-01 81.4% 77.8%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 3.83e-01 83.7% 34.3%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 50.0 3.72e-01 81.4% 82.7%
4991814 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.67 57.0 4.03e-01 100.0% 58.6%
3533173 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.65 53.0 4.39e-01 95.3% 95.0%
3510929 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.64 53.0 3.32e-01 100.0% 26.5%
3460641 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.64 48.0 3.05e-01 83.7% 84.7%
3483645 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 51.0 4.29e-01 95.3% 95.0%
3475783 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.63 46.0 4.89e-01 81.4% 100.0%
5029894 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.63 53.0 3.61e-01 97.7% 25.5%
4383342 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.61 50.0 4.03e-01 100.0% 61.0%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 50.0 4.93e-01 100.0% 87.5%
4249173 207.1.1.426 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_8, RA_3, LRR_14 0.60 49.0 2.71e-01 100.0% 8.9%
5081038 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 3.93e-01 100.0% 46.0%
4228966 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 48.0 3.76e-01 100.0% 94.5%
3404175 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 48.0 4.54e-01 95.3% 74.5%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.59 49.0 3.23e-01 100.0% 32.5%
4284428 329.1.1.1 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.58 41.0 3.05e-01 79.1% 56.0%
4353391 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 2.37e-01 81.4% 22.8%
4461643 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.58 48.0 4.33e-01 95.3% 68.3%
3816857 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.58 42.0 2.47e-01 81.4% 34.3%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 46.0 3.00e-01 97.7% 31.1%
4216350 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 45.0 3.06e-01 88.4% 33.1%
3405674 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.57 46.0 4.37e-01 95.3% 74.5%
4051753 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.57 40.0 3.20e-01 74.4% 38.9%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 45.0 3.07e-01 100.0% 34.9%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.56 45.0 2.99e-01 100.0% 30.9%
3825377 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 42.0 2.42e-01 100.0% 13.7%
3648065 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.56 40.0 2.36e-01 81.4% 34.1%
3470035 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 45.0 2.83e-01 100.0% 32.0%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 44.0 2.93e-01 100.0% 32.1%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 2.69e-01 83.7% 18.0%
3176986 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 44.0 3.64e-01 97.7% 71.8%
3543655 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 42.0 2.84e-01 100.0% 31.8%
3880869 11.1.1.260 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 0.54 42.0 3.39e-01 100.0% 48.6%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 42.0 2.93e-01 100.0% 37.8%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.53 39.0 2.63e-01 90.7% 23.2%
4458441 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.53 41.0 2.98e-01 97.7% 38.1%
3988557 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.52 44.0 2.71e-01 97.7% 37.8%
3301989 10.12.1.16 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.52 35.0 2.27e-01 79.1% 54.8%
4184275 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.52 41.0 2.54e-01 100.0% 13.7%
3988679 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 43.0 2.63e-01 100.0% 61.6%
5042324 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.51 42.0 3.40e-01 97.7% 47.8%
3962617 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 41.0 2.75e-01 100.0% 30.7%
2866954 304.169.1.3 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.50 37.0 3.28e-01 100.0% 71.6%
None 0.50 42.0 3.36e-01 100.0% 62.1%