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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00024
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00024
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-98
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.76 | 61.0 | 6.23e-01 | 85.7% | 87.5% |
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 0.65 | 53.0 | 5.20e-01 | 88.8% | 92.5% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.60 | 33.0 | 3.42e-01 | 79.6% | 54.9% |
| 6dddH00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.55 | 36.0 | 3.72e-01 | 89.8% | 71.0% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.59e-01 | 88.8% | 70.3% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 28.0 | 3.23e-01 | 82.7% | 72.7% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 29.0 | 3.38e-01 | 84.7% | 78.8% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 29.0 | 3.40e-01 | 81.6% | 84.7% |
| 1hekA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.52 | 42.0 | 3.99e-01 | 87.8% | 96.6% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.52 | 36.0 | 3.03e-01 | 72.4% | 97.2% |
| 3hkoA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.43e-01 | 95.9% | 95.6% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 42.0 | 2.78e-01 | 95.9% | 91.4% |
| 2kaaA00 | 3.10.450.30 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases | 0.51 | 39.0 | 3.60e-01 | 82.7% | 100.0% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 30.0 | 3.25e-01 | 81.6% | 68.8% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.51 | 29.0 | 3.44e-01 | 82.7% | 85.7% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 27.0 | 3.28e-01 | 82.7% | 87.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185252 | 3547.1.1.1 ↗ | a+b two layers › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › uncharacterised protein rbstp2171 › DUF6848 | 0.76 | 61.0 | 6.23e-01 | 85.7% | 87.5% |
| 4957561 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.68 | 57.0 | 5.61e-01 | 92.9% | 100.0% |
| 3586672 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.64 | 50.0 | 4.95e-01 | 82.7% | 87.6% |
| 3816553 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.60 | 30.0 | 3.75e-01 | 79.6% | 81.8% |
| 3702727 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 36.0 | 3.61e-01 | 91.8% | 59.0% |
| 3299572 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 40.0 | 3.91e-01 | 75.5% | 93.3% |
| 396031 | 4.22.1.1 ↗ | beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom | 0.54 | 34.0 | 3.42e-01 | 88.8% | 61.4% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.52 | 32.0 | 3.36e-01 | 87.8% | 68.2% |
| 5016721 | 6132.1.1.14 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › PF29261 | 0.52 | 32.0 | 3.93e-01 | 70.4% | 100.0% |
| 3598758 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.52 | 36.0 | 3.12e-01 | 73.5% | 98.8% |
| 3627712 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 39.0 | 2.45e-01 | 81.6% | 63.4% |
| 3934910 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.51 | 38.0 | 2.86e-01 | 77.6% | 43.0% |
| 3518858 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 30.0 | 3.21e-01 | 80.6% | 70.0% |
D2
medium
residues 99-268
Domain cluster:
rep: PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00222__D47-252
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 21.0 | 2.81e-01 | 70.6% | 57.1% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 22.0 | 2.79e-01 | 82.4% | 61.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955756 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 21.0 | 3.08e-01 | 75.9% | 72.0% |
| 3247221 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.55 | 24.0 | 2.79e-01 | 77.1% | 55.2% |
| 3715856 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.54 | 23.0 | 3.05e-01 | 70.0% | 71.1% |
| None | — | 0.54 | 39.0 | 3.59e-01 | 74.7% | 73.8% | |
| 3671527 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 38.0 | 3.46e-01 | 74.1% | 78.5% |
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.51 | 32.0 | 3.50e-01 | 91.2% | 76.3% |
| 3804688 | 5069.1.1.55 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 | 0.50 | 29.0 | 2.98e-01 | 87.6% | 55.9% |