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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00032
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00032
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 303-352
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nqlB00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.66 | 34.0 | 3.55e-01 | 94.0% | 52.1% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 50.0 | 4.54e-01 | 94.0% | 95.9% |
| 3ejxA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 51.0 | 3.83e-01 | 100.0% | 100.0% |
| 8djfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 53.0 | 3.31e-01 | 100.0% | 99.6% |
| 1yrtA02 | 3.90.1760.10 | Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain | 0.59 | 48.0 | 3.64e-01 | 100.0% | 35.4% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 47.0 | 3.48e-01 | 100.0% | 34.1% |
| 7o85C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 45.0 | 4.04e-01 | 94.0% | 80.5% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.56 | 47.0 | 3.09e-01 | 98.0% | 36.1% |
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 44.0 | 3.45e-01 | 94.0% | 50.4% |
| 1uh9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.56 | 49.0 | 3.52e-01 | 100.0% | 53.7% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 43.0 | 3.38e-01 | 94.0% | 46.8% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.06e-01 | 76.0% | 75.7% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 42.0 | 3.34e-01 | 94.0% | 44.7% |
| 2gq1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 42.0 | 3.08e-01 | 92.0% | 99.4% |
| 3fetA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 42.0 | 2.98e-01 | 90.0% | 78.8% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.20e-01 | 88.0% | 47.9% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 45.0 | 3.55e-01 | 100.0% | 55.4% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 35.0 | 3.41e-01 | 92.0% | 60.7% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 38.0 | 3.26e-01 | 100.0% | 48.1% |
| 3lidA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 41.0 | 3.25e-01 | 100.0% | 70.1% |
| 3sknA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.51e-01 | 100.0% | 52.8% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.52 | 41.0 | 2.53e-01 | 90.0% | 16.2% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.52 | 36.0 | 3.66e-01 | 100.0% | 72.5% |
| 1cw1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 41.0 | 2.53e-01 | 100.0% | 76.9% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 38.0 | 3.57e-01 | 100.0% | 66.1% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 41.0 | 2.99e-01 | 100.0% | 64.7% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 38.0 | 3.10e-01 | 90.0% | 98.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928189 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.67 | 56.0 | 3.77e-01 | 98.0% | 71.2% |
| 4423868 | 387.1.1.6 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Atracotoxin | 0.65 | 38.0 | 4.00e-01 | 100.0% | 64.4% |
| 3934437 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.64 | 38.0 | 4.49e-01 | 98.0% | 100.0% |
| 1587579 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.63 | 46.0 | 3.79e-01 | 100.0% | 41.7% |
| 4983901 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.63 | 52.0 | 4.05e-01 | 100.0% | 84.8% |
| 4028321 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 47.0 | 3.38e-01 | 100.0% | 38.4% |
| 3883161 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 38.0 | 3.16e-01 | 100.0% | 37.8% |
| 4033574 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 43.0 | 4.07e-01 | 80.0% | 73.3% |
| 2773193 | 2002.1.1.173 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH123_cat | 0.58 | 42.0 | 2.48e-01 | 78.0% | 19.0% |
| 1226705 | 4036.1.1.1 ↗ | a+b two layers › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Insertion domain in adenylylcyclase toxin (the edema factor) › Anthrax_toxA | 0.58 | 48.0 | 3.74e-01 | 100.0% | 41.3% |
| 3506217 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.57 | 37.0 | 4.00e-01 | 100.0% | 84.6% |
| 3508716 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.56 | 44.0 | 3.45e-01 | 100.0% | 48.9% |
| 3902975 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.55 | 41.0 | 3.89e-01 | 100.0% | 66.7% |
| 4082864 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 40.0 | 3.22e-01 | 80.0% | 45.7% |
| 5053041 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 46.0 | 3.49e-01 | 100.0% | 54.1% |
| 5077903 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.55 | 48.0 | 2.78e-01 | 100.0% | 20.0% |
| 4495621 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 44.0 | 3.43e-01 | 100.0% | 37.0% |
| 4054705 | 7577.1.1.28 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2, Cys_Met_Meta_PP | 0.54 | 43.0 | 2.65e-01 | 100.0% | 37.4% |
| 5047178 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 43.0 | 3.38e-01 | 100.0% | 53.7% |
| 3701194 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.54 | 47.0 | 3.41e-01 | 100.0% | 64.3% |
| 3784907 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.54 | 42.0 | 3.67e-01 | 92.0% | 63.5% |
| 4962276 | 4.26.1.10 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › DUF7837 | 0.53 | 38.0 | 4.03e-01 | 100.0% | 86.7% |
| 3765274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 38.0 | 3.18e-01 | 94.0% | 43.3% |
| 4169712 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.53 | 41.0 | 3.21e-01 | 94.0% | 41.6% |
| 3662282 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.94e-01 | 100.0% | 23.7% |
| 3364335 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.53 | 42.0 | 3.10e-01 | 100.0% | 41.8% |
| 3928262 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 39.0 | 3.72e-01 | 100.0% | 68.3% |
| 5051230 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.52 | 40.0 | 3.28e-01 | 100.0% | 56.0% |
| 3933025 | 387.1.3.8 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like › Lustrin_cystein | 0.52 | 37.0 | 3.76e-01 | 100.0% | 78.0% |
| 3434713 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 42.0 | 3.26e-01 | 100.0% | 62.2% |
| 5027256 | 205.1.1.15 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_6 | 0.52 | 41.0 | 3.47e-01 | 96.0% | 52.4% |
| 3183994 | 3385.1.1.2 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 | 0.52 | 42.0 | 3.70e-01 | 98.0% | 95.2% |
| 4979113 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.51 | 36.0 | 2.60e-01 | 76.0% | 83.0% |
| 3846212 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 38.0 | 3.29e-01 | 100.0% | 51.2% |
| 3778417 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.50 | 40.0 | 2.61e-01 | 100.0% | 28.7% |
| 3607994 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.50 | 40.0 | 2.67e-01 | 98.0% | 95.7% |
| 3507664 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 37.0 | 3.56e-01 | 100.0% | 68.3% |
| 3633434 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.50 | 37.0 | 3.38e-01 | 100.0% | 58.6% |
D2
medium
residues 21-139
Domain cluster:
rep: KX925554.1__APC46301.1__X__00039__D38-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01909.30 best | NTP_transf_2 | 28.2 | 2.80e-06 | 77.3% | 61.3% |
D3
medium
residues 150-231