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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00037
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00037
Identity
- Kingdom:
- phage
Quality
91.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-104
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.70 | 40.0 | 3.38e-01 | 82.4% | 34.5% |
| 3f6gA02 | 3.30.160.340 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 36.0 | 4.21e-01 | 71.4% | 76.2% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 38.0 | 3.27e-01 | 74.7% | 35.7% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.62 | 42.0 | 3.13e-01 | 70.3% | 47.0% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 40.0 | 3.59e-01 | 74.7% | 45.5% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 41.0 | 3.39e-01 | 70.3% | 47.6% |
| 3cu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 37.0 | 3.06e-01 | 74.7% | 34.6% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 40.0 | 3.30e-01 | 70.3% | 46.5% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.58 | 48.0 | 3.91e-01 | 89.0% | 50.6% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 36.0 | 3.22e-01 | 73.6% | 43.4% |
| 4iu2B01 | 2.60.40.3810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 4.51e-01 | 97.8% | 71.8% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 37.0 | 3.11e-01 | 72.5% | 38.6% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 42.0 | 3.31e-01 | 75.8% | 60.6% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.57 | 39.0 | 3.51e-01 | 74.7% | 48.1% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 40.0 | 3.51e-01 | 78.0% | 50.4% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 35.0 | 3.03e-01 | 73.6% | 40.1% |
| 4lzkA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.54 | 38.0 | 3.18e-01 | 73.6% | 47.2% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 33.0 | 2.88e-01 | 72.5% | 40.4% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 43.0 | 3.68e-01 | 96.7% | 52.7% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.18e-01 | 91.2% | 45.3% |
| 3ec9A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 32.0 | 2.89e-01 | 73.6% | 41.1% |
| 2ckfB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 33.0 | 2.76e-01 | 73.6% | 32.9% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.53 | 37.0 | 3.18e-01 | 72.5% | 62.8% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.33e-01 | 81.3% | 58.1% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.21e-01 | 78.0% | 53.1% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 29.0 | 2.82e-01 | 89.0% | 46.7% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.06e-01 | 73.6% | 46.9% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.65 | 44.0 | 3.83e-01 | 70.3% | 76.4% |
| 3459974 | 243.1.1.45 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C | 0.64 | 38.0 | 3.19e-01 | 73.6% | 33.3% |
| 5034706 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 36.0 | 3.90e-01 | 72.5% | 66.7% |
| 5057162 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.63 | 41.0 | 3.75e-01 | 85.7% | 48.8% |
| 4942841 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 40.0 | 3.74e-01 | 74.7% | 52.2% |
| 5034763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 48.0 | 4.04e-01 | 82.4% | 63.3% |
| 5063899 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 42.0 | 3.20e-01 | 71.4% | 44.1% |
| 3928228 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.61 | 42.0 | 3.12e-01 | 71.4% | 39.2% |
| 5033330 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 4.10e-01 | 73.6% | 100.0% |
| 4950607 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.60 | 36.0 | 2.80e-01 | 90.1% | 28.9% |
| 3704007 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.60 | 43.0 | 3.17e-01 | 74.7% | 66.0% |
| 5040972 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 35.0 | 3.78e-01 | 72.5% | 69.3% |
| 4928967 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 4.06e-01 | 84.6% | 75.5% |
| 4427435 | 7503.1.1.22 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF29199 | 0.59 | 37.0 | 3.22e-01 | 76.9% | 40.0% |
| 3279764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 31.0 | 3.50e-01 | 74.7% | 65.7% |
| 2632043 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.58 | 37.0 | 3.27e-01 | 74.7% | 41.4% |
| 4929211 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.02e-01 | 85.7% | 74.3% |
| 3950026 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 35.0 | 3.16e-01 | 74.7% | 41.8% |
| 3285905 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 36.0 | 3.26e-01 | 73.6% | 45.4% |
| 3479831 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 36.0 | 3.01e-01 | 74.7% | 35.2% |
| 3785390 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 44.0 | 4.04e-01 | 84.6% | 68.8% |
| 3701022 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 37.0 | 3.36e-01 | 76.9% | 48.8% |
| 3962632 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.56 | 40.0 | 3.45e-01 | 74.7% | 50.0% |
| 3970009 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 36.0 | 2.95e-01 | 74.7% | 34.9% |
| 4157765 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.56 | 41.0 | 3.32e-01 | 79.1% | 61.6% |
| 134734 | 243.1.1.13 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD | 0.55 | 35.0 | 3.03e-01 | 73.6% | 40.1% |
| 3604221 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.55 | 46.0 | 4.00e-01 | 93.4% | 94.5% |
| 3941713 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.55 | 39.0 | 3.44e-01 | 74.7% | 50.7% |
| 3259935 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.55 | 37.0 | 2.75e-01 | 70.3% | 45.2% |
| 3710606 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.54 | 33.0 | 2.96e-01 | 73.6% | 40.0% |
| 4529819 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.54 | 40.0 | 3.50e-01 | 76.9% | 77.8% |
| 3959285 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 35.0 | 3.59e-01 | 74.7% | 69.0% |
| 3164124 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.54 | 43.0 | 3.92e-01 | 85.7% | 83.3% |
| 4608992 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.54 | 33.0 | 2.80e-01 | 73.6% | 34.2% |
| 3412668 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 41.0 | 3.80e-01 | 83.5% | 67.5% |
| 3971060 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.53 | 41.0 | 3.71e-01 | 84.6% | 97.7% |
| 4955214 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 40.0 | 2.75e-01 | 81.3% | 81.2% |
| 3317574 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.53 | 40.0 | 3.47e-01 | 82.4% | 84.0% |
| 3951229 | 243.1.1.77 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 | 0.52 | 34.0 | 2.93e-01 | 74.7% | 40.1% |
| 3564235 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 40.0 | 3.67e-01 | 85.7% | 72.8% |
| 4989642 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.51 | 42.0 | 2.86e-01 | 90.1% | 84.3% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 40.0 | 3.67e-01 | 84.6% | 65.0% |
| 3473974 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.50 | 37.0 | 3.23e-01 | 79.1% | 77.2% |