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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00096

Bact-Vir

BML_coassembly_scaffold_108_prodigal-single.1__X__X__00096

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-87
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.51e-01 100.0% 69.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.41e-01 100.0% 68.3%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.66 52.0 4.14e-01 87.2% 46.3%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 52.0 3.80e-01 100.0% 33.3%
3ottB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 3.51e-01 83.0% 44.4%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.62 49.0 3.26e-01 100.0% 21.4%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.62 46.0 4.25e-01 91.5% 62.9%
5w4tB03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.61 48.0 3.81e-01 91.5% 74.1%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.46e-01 85.1% 65.2%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.59 36.0 3.03e-01 78.7% 32.5%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 47.0 3.01e-01 100.0% 23.8%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.58 46.0 2.72e-01 91.5% 12.0%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 47.0 3.14e-01 91.5% 59.4%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 46.0 3.76e-01 95.7% 98.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.27e-01 100.0% 35.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.31e-01 100.0% 28.3%
2j43A01 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 46.0 3.68e-01 93.6% 81.2%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 45.0 3.91e-01 95.7% 91.7%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 48.0 2.86e-01 100.0% 14.4%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 40.0 2.68e-01 83.0% 35.6%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 43.0 3.61e-01 95.7% 92.8%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 2.89e-01 100.0% 45.4%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 42.0 3.46e-01 95.7% 97.1%
5erdB05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 42.0 3.49e-01 91.5% 79.8%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 39.0 2.75e-01 85.1% 41.7%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.66e-01 100.0% 17.4%
8egxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 40.0 3.34e-01 91.5% 73.3%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 44.0 3.04e-01 100.0% 38.9%
2vr3B02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 2.99e-01 93.6% 77.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 37.0 3.54e-01 93.6% 62.5%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.53 41.0 2.90e-01 100.0% 47.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 42.0 4.07e-01 100.0% 85.7%
7cymA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 39.0 3.40e-01 89.4% 78.2%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.26e-01 100.0% 86.0%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.53 43.0 3.21e-01 100.0% 54.0%
5iryA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 39.0 3.35e-01 91.5% 78.7%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 42.0 3.35e-01 100.0% 87.7%
6vhiA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.25e-01 89.4% 75.7%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 2.74e-01 97.9% 37.1%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.29e-01 93.6% 69.2%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.61e-01 95.7% 66.2%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.51 42.0 3.29e-01 100.0% 82.9%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.51 39.0 3.09e-01 100.0% 80.9%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.23e-01 100.0% 86.8%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.15e-01 100.0% 95.2%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 39.0 3.23e-01 100.0% 87.7%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.51e-01 97.9% 73.5%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 34.0 2.66e-01 80.9% 29.5%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.50 40.0 2.94e-01 100.0% 68.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3215393 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.83 75.0 5.14e-01 100.0% 32.0%
3170251 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.79 72.0 4.99e-01 100.0% 37.9%
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.75 66.0 5.00e-01 100.0% 66.4%
3415831 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.74 66.0 4.86e-01 100.0% 65.8%
3931053 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.74 66.0 5.13e-01 100.0% 77.0%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.58e-01 100.0% 78.6%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 5.72e-01 100.0% 84.6%
5072932 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.72 63.0 5.87e-01 100.0% 80.0%
4135259 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 59.0 5.31e-01 100.0% 67.7%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 62.0 4.95e-01 100.0% 56.7%
3922964 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 58.0 3.39e-01 100.0% 23.9%
4224915 2.16.1.1 beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.67 53.0 4.13e-01 87.2% 44.0%
4457231 2.16.1.1 beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.67 53.0 4.13e-01 87.2% 44.4%
4025955 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.64 52.0 3.00e-01 100.0% 9.5%
6323 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.63 52.0 3.82e-01 100.0% 34.0%
5030457 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.62 50.0 3.98e-01 100.0% 50.9%
3681185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.61 48.0 3.05e-01 89.4% 17.1%
3936442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.14e-01 100.0% 56.0%
3804095 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 49.0 3.48e-01 97.9% 57.2%
3742508 11.1.1.196 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › N_BRCA1_IG 0.59 48.0 3.74e-01 91.5% 78.2%
3935578 7577.1.1.3 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.59 49.0 2.89e-01 97.9% 25.1%
4160839 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 48.0 3.74e-01 95.7% 100.0%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 48.0 3.58e-01 100.0% 47.7%
3920826 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.57 45.0 3.24e-01 97.9% 98.2%
5033551 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.81e-01 100.0% 18.2%
3385471 4998.1.1.0 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain 0.57 45.0 3.39e-01 100.0% 57.9%
3629714 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.56 45.0 3.80e-01 100.0% 49.5%
4558682 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.56 45.0 3.05e-01 100.0% 65.0%
4216341 223.1.1.132 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.56 38.0 2.42e-01 78.7% 13.0%
3246034 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.55 44.0 3.28e-01 97.9% 74.0%
3740318 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.55 40.0 2.79e-01 83.0% 43.2%
3487488 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.55 41.0 3.02e-01 89.4% 56.7%
3822649 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.55 40.0 2.76e-01 85.1% 39.2%
4069943 11.1.1.651 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_2nd 0.55 43.0 3.51e-01 95.7% 77.1%
3429608 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.55 43.0 2.42e-01 100.0% 5.7%
3933484 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.54 44.0 3.17e-01 97.9% 66.7%
5006284 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.79e-01 91.5% 70.7%
3253731 11.1.1.196 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › N_BRCA1_IG 0.54 41.0 3.22e-01 89.4% 69.6%
3060582 5.1.4.58 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.54 43.0 2.64e-01 100.0% 16.7%
5053021 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.54 42.0 3.65e-01 100.0% 83.3%
3865506 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.53 40.0 3.17e-01 85.1% 38.2%
1688207 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.53 43.0 2.72e-01 100.0% 21.5%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.52 39.0 3.51e-01 91.5% 76.2%
4982570 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.52 37.0 3.40e-01 83.0% 55.7%
3700439 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.51 40.0 2.82e-01 100.0% 51.5%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.51 39.0 3.89e-01 100.0% 90.0%
3280885 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.51 41.0 2.51e-01 100.0% 52.6%
3649429 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.51 40.0 2.85e-01 93.6% 42.4%
3501287 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 35.0 3.69e-01 83.0% 92.5%
4935912 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.50 40.0 3.67e-01 100.0% 84.3%