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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00134
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-79
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.68 | 50.0 | 5.26e-01 | 100.0% | 90.8% |
| 3di5A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 52.0 | 4.30e-01 | 100.0% | 79.9% |
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 53.0 | 4.37e-01 | 100.0% | 79.6% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 49.0 | 3.45e-01 | 92.1% | 46.4% |
| 3dwbA02 | 1.10.1380.10 | Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 | 0.60 | 52.0 | 3.43e-01 | 100.0% | 52.8% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.59 | 41.0 | 3.85e-01 | 72.4% | 83.3% |
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.59 | 32.0 | 3.65e-01 | 98.7% | 70.9% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 42.0 | 3.98e-01 | 80.3% | 70.5% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.56 | 41.0 | 3.74e-01 | 78.9% | 92.4% |
| 2x5jQ01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 38.0 | 2.95e-01 | 73.7% | 87.2% |
| 5k2mA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 38.0 | 3.96e-01 | 89.5% | 84.1% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 37.0 | 2.94e-01 | 72.4% | 89.2% |
| 3vvmA02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 43.0 | 3.95e-01 | 97.4% | 67.6% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.53 | 32.0 | 3.56e-01 | 90.8% | 82.1% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.53 | 38.0 | 3.39e-01 | 76.3% | 67.0% |
| 1hfxA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 44.0 | 3.90e-01 | 100.0% | 73.2% |
| 1w66A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 3.30e-01 | 97.4% | 93.3% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.52 | 43.0 | 3.61e-01 | 94.7% | 62.9% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 38.0 | 3.39e-01 | 80.3% | 85.7% |
| 4bqnA02 | 1.10.10.2490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 44.0 | 3.75e-01 | 94.7% | 69.8% |
| 2b61A02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.52 | 44.0 | 4.02e-01 | 100.0% | 70.2% |
| 4akgA01 | 1.20.1050.130 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 36.0 | 2.73e-01 | 75.0% | 71.0% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.52 | 27.0 | 3.27e-01 | 100.0% | 76.5% |
| 8a5eD01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.87e-01 | 100.0% | 79.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924503 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.74 | 61.0 | 4.29e-01 | 90.8% | 47.2% |
| 1117717 | 2007.18.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Polysaccharide biosynthesis enzyme WcbI › Polysaccharide biosynthesis enzyme WcbI › WcbI | 0.62 | 45.0 | 3.03e-01 | 77.6% | 62.4% |
| 5026463 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.61 | 48.0 | 3.76e-01 | 85.5% | 67.3% |
| 4594252 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.61 | 46.0 | 4.25e-01 | 81.6% | 95.0% |
| 3915542 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.61 | 43.0 | 4.22e-01 | 72.4% | 78.8% |
| 3239956 | 3409.1.1.1 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 | 0.60 | 48.0 | 3.36e-01 | 88.2% | 63.1% |
| 5014907 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.60 | 51.0 | 4.00e-01 | 94.7% | 59.4% |
| 5053794 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.58 | 40.0 | 3.44e-01 | 73.7% | 85.4% |
| 4953676 | 314.1.1.8 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › DUF366 | 0.57 | 46.0 | 3.42e-01 | 86.8% | 97.4% |
| 3644530 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.57 | 40.0 | 4.35e-01 | 85.5% | 93.3% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.57 | 33.0 | 2.53e-01 | 85.5% | 23.8% |
| 3354127 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.56 | 41.0 | 4.52e-01 | 88.2% | 100.0% |
| 3657647 | 1015.1.1.0 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs | 0.56 | 45.0 | 3.38e-01 | 92.1% | 93.3% |
| 4928764 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.55 | 40.0 | 3.28e-01 | 80.3% | 88.1% |
| 3350669 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.55 | 39.0 | 4.04e-01 | 84.2% | 81.4% |
| 3421663 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.54 | 39.0 | 4.01e-01 | 84.2% | 81.4% |
| 4889133 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.54 | 44.0 | 3.72e-01 | 90.8% | 76.9% |
| 4670897 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 40.0 | 3.31e-01 | 80.3% | 46.4% |
| 3621974 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 42.0 | 4.23e-01 | 84.2% | 96.0% |
| 5012811 | 2006.1.3.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 | 0.53 | 36.0 | 2.95e-01 | 71.1% | 60.1% |
| 4504505 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.53 | 38.0 | 4.12e-01 | 86.8% | 96.7% |
| 5001329 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.53 | 36.0 | 3.51e-01 | 71.1% | 77.6% |
| 4310836 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.53 | 41.0 | 3.05e-01 | 88.2% | 80.9% |
| 4214233 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.52 | 38.0 | 3.77e-01 | 85.5% | 71.1% |
| 5053431 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.52 | 41.0 | 3.44e-01 | 93.4% | 71.6% |
| 4258207 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.51 | 35.0 | 3.92e-01 | 82.9% | 98.2% |
| 3775175 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.51 | 40.0 | 3.66e-01 | 86.8% | 63.0% |
| 223314 | 4322.1.1.0 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like | 0.51 | 41.0 | 3.36e-01 | 89.5% | 63.4% |
| 4934918 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.51 | 41.0 | 4.29e-01 | 98.7% | 100.0% |
| 3696115 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 38.0 | 2.76e-01 | 81.6% | 67.7% |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 2.74e-01 | 96.1% | 82.8% |
| 5000881 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 37.0 | 3.03e-01 | 81.6% | 40.6% |
| 3962196 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.50 | 37.0 | 3.80e-01 | 85.5% | 87.1% |