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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00215

Bact-Vir

BML_coassembly_scaffold_108_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

59.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-55
PDB
D2 high residues 79-135
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 6.68e-01 96.5% 89.7%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 68.0 5.99e-01 100.0% 81.7%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.74 64.0 6.00e-01 100.0% 79.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.73 61.0 4.83e-01 100.0% 45.4%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.62e-01 71.9% 70.9%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.66 55.0 5.15e-01 100.0% 76.7%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 4.35e-01 71.9% 67.2%
5wvoC02 1.10.10.2230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 57.0 4.93e-01 100.0% 83.0%
6lcuA02 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.64 55.0 4.58e-01 100.0% 72.4%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 4.87e-01 91.2% 95.5%
4fqgA02 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.64 54.0 5.35e-01 100.0% 91.8%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 50.0 4.03e-01 87.7% 84.5%
6kmjA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 50.0 4.05e-01 87.7% 87.5%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 51.0 4.05e-01 91.2% 86.0%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 47.0 3.32e-01 82.5% 57.6%
4qnsA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 49.0 4.06e-01 87.7% 85.8%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 49.0 3.94e-01 86.0% 85.1%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 52.0 4.92e-01 100.0% 79.2%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.61 53.0 4.64e-01 100.0% 65.2%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 50.0 4.12e-01 100.0% 48.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 38.0 3.44e-01 71.9% 44.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 40.0 3.70e-01 70.2% 53.1%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 45.0 2.79e-01 84.2% 20.4%
5mq1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 46.0 3.88e-01 89.5% 78.7%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.59 45.0 3.76e-01 89.5% 80.0%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.59 40.0 2.89e-01 70.2% 51.8%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.59 51.0 3.49e-01 100.0% 41.1%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 40.0 3.56e-01 71.9% 70.1%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.59 50.0 4.55e-01 100.0% 85.2%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.15e-01 89.5% 95.3%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.58 47.0 3.54e-01 100.0% 68.8%
3efoB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.58 48.0 3.68e-01 100.0% 72.8%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 41.0 2.92e-01 73.7% 29.8%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.42e-01 100.0% 31.9%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 40.0 3.17e-01 77.2% 37.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.49e-01 82.5% 79.2%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.55 38.0 3.33e-01 71.9% 88.2%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 38.0 3.25e-01 70.2% 63.1%
3u7eB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.22e-01 93.0% 63.6%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 42.0 3.68e-01 84.2% 79.3%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.54 42.0 3.74e-01 87.7% 84.7%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.39e-01 100.0% 39.4%
1un8A02 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.54 44.0 3.10e-01 93.0% 32.8%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 42.0 3.36e-01 89.5% 48.7%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.32e-01 96.5% 96.5%
3tejA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 2.82e-01 100.0% 45.3%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 35.0 2.86e-01 71.9% 52.8%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 36.0 2.86e-01 71.9% 100.0%
3bf5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 39.0 2.63e-01 82.5% 84.5%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 41.0 3.27e-01 100.0% 80.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957413 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.86 69.0 7.27e-01 100.0% 98.0%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 68.0 6.69e-01 100.0% 83.3%
3789626 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 6.78e-01 100.0% 81.5%
3578362 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.82 71.0 6.38e-01 100.0% 70.7%
3924709 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.82 70.0 6.69e-01 100.0% 81.5%
4946290 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 70.0 6.71e-01 98.2% 83.1%
4944622 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 70.0 5.86e-01 98.2% 80.0%
3982565 101.1.1.202 alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.79 68.0 6.94e-01 100.0% 98.2%
3254663 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 6.18e-01 100.0% 72.0%
3226857 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.79 66.0 5.78e-01 100.0% 62.4%
4337422 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.78 67.0 4.77e-01 100.0% 32.9%
3886202 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.78 66.0 6.74e-01 98.2% 96.4%
3489868 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.78 67.0 5.71e-01 100.0% 60.0%
3893457 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.75 67.0 6.27e-01 98.2% 84.3%
3464617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 5.96e-01 100.0% 85.0%
3353067 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.75 67.0 5.98e-01 100.0% 86.3%
3453546 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 5.75e-01 100.0% 78.5%
3236801 101.1.2.555 alpha arrays › HTH › HTH › winged helix domain › PF29388 0.73 63.0 5.58e-01 100.0% 85.9%
3935995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.71 62.0 5.68e-01 100.0% 74.7%
5053839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 5.73e-01 100.0% 85.3%
5014572 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.70 62.0 4.45e-01 100.0% 44.2%
4948481 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.70 63.0 4.01e-01 100.0% 23.8%
4947979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.75e-01 98.2% 91.4%
5057048 7011.1.1.0 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.70 52.0 3.20e-01 84.2% 40.8%
3900652 528.1.1.1 alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.69 60.0 3.76e-01 100.0% 36.2%
4126690 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.68 54.0 5.48e-01 100.0% 90.9%
3687843 101.46.1.0 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.68 53.0 4.42e-01 100.0% 47.2%
3792916 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.67 50.0 4.60e-01 80.7% 80.0%
3714165 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 46.0 3.08e-01 71.9% 71.1%
4960347 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 44.0 3.79e-01 70.2% 65.3%
3998718 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.66 55.0 5.07e-01 100.0% 70.9%
3584608 3660.1.1.3 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › OPA1_C 0.65 56.0 4.54e-01 100.0% 51.3%
3491303 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 4.76e-01 100.0% 73.7%
3789830 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.64 52.0 3.92e-01 91.2% 38.6%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.64 52.0 4.68e-01 98.2% 90.0%
5056193 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.64 49.0 3.08e-01 84.2% 52.3%
3224103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 54.0 4.30e-01 100.0% 88.8%
4994576 101.35.1.36 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 0.63 52.0 4.94e-01 94.7% 78.3%
3628708 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.63 48.0 3.60e-01 84.2% 65.3%
3493368 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.63 51.0 3.94e-01 89.5% 76.9%
5007040 4204.1.1.5 alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 0.63 49.0 3.50e-01 86.0% 59.4%
3723352 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.63 49.0 3.93e-01 87.7% 83.3%
4195311 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.62 49.0 3.82e-01 87.7% 72.6%
5009732 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.62 53.0 3.68e-01 100.0% 33.8%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.62 52.0 4.57e-01 100.0% 93.3%
3484314 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.60 52.0 3.97e-01 100.0% 87.1%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 47.0 4.27e-01 89.5% 95.0%
3732476 3755.4.1.5 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin 0.60 42.0 3.00e-01 73.7% 78.3%
143026 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.60 50.0 3.38e-01 100.0% 29.2%
4942190 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.60 47.0 4.14e-01 89.5% 86.4%
3216820 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 50.0 3.23e-01 100.0% 31.7%
60156 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.59 49.0 3.44e-01 100.0% 27.5%
3878199 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 50.0 3.74e-01 98.2% 80.7%
3648998 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.58 44.0 3.82e-01 82.5% 71.1%
3186152 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 48.0 3.07e-01 100.0% 79.7%
3607327 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.58e-01 100.0% 93.3%
3263033 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.54 41.0 3.48e-01 87.7% 77.3%
5072863 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.54 44.0 3.23e-01 98.2% 35.1%
3485417 528.1.1.1 alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.54 44.0 2.85e-01 100.0% 25.7%
3797372 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 45.0 3.38e-01 100.0% 96.4%
4009834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.09e-01 100.0% 77.5%
3492344 7581.1.1.11 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › HMG_CoA_synt_C 0.54 43.0 2.86e-01 96.5% 31.3%
3358888 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 38.0 3.23e-01 82.5% 58.2%
3608731 3949.1.1.0 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.52 42.0 4.01e-01 93.0% 77.1%
4934986 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.52 38.0 3.06e-01 84.2% 36.2%
3359764 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.52 40.0 3.31e-01 93.0% 63.2%
3432597 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.52 39.0 3.40e-01 100.0% 49.5%
4010451 3788.1.1.15 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.51 36.0 3.35e-01 73.7% 62.7%
3933901 3619.1.1.0 alpha arrays › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain 0.50 38.0 2.70e-01 87.7% 40.0%